Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQL34_RS05285 Genome accession   NZ_LS483339
Coordinates   974674..974862 (+) Length   62 a.a.
NCBI ID   WP_003045927.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 969674..979862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS12610 (NCTC12958_01092) - 973299..974531 (+) 1233 WP_415241692.1 zincin-like metallopeptidase domain-containing protein -
  DQL34_RS05285 (NCTC12958_01093) prx 974674..974862 (+) 189 WP_003045927.1 hypothetical protein Regulator
  DQL34_RS05290 (NCTC12958_01094) - 975044..976792 (+) 1749 WP_111679566.1 type IA DNA topoisomerase -
  DQL34_RS05295 (NCTC12958_01095) clpE 976794..978638 (+) 1845 WP_172451564.1 AAA family ATPase Regulator
  DQL34_RS05300 (NCTC12958_01096) - 978731..979078 (+) 348 WP_000791789.1 TrbC/VirB2 family protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7081.92 Da        Isoelectric Point: 4.0742

>NTDB_id=1018563 DQL34_RS05285 WP_003045927.1 974674..974862(+) (prx) [Streptococcus thermophilus strain NCTC12958]
MLHYDELKQAVDNGYVKGDEVSVVRKEGKIFDYVLPNEPVRPWEVVTVESLSEVLSELSESE

Nucleotide


Download         Length: 189 bp        

>NTDB_id=1018563 DQL34_RS05285 WP_003045927.1 974674..974862(+) (prx) [Streptococcus thermophilus strain NCTC12958]
ATGTTACATTATGATGAATTGAAGCAGGCTGTAGATAATGGTTATGTTAAAGGGGATGAGGTTAGTGTGGTCAGAAAAGA
AGGGAAGATTTTTGATTATGTTTTACCAAATGAACCTGTAAGACCGTGGGAAGTTGTAACAGTAGAATCCTTATCTGAAG
TTCTGTCTGAGCTTTCTGAGTCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

66.102

95.161

0.629
  prx Streptococcus pyogenes MGAS315

63.333

96.774

0.613
  prx Streptococcus pyogenes MGAS315

61.017

95.161

0.581
  prx Streptococcus pyogenes MGAS315

58.333

96.774

0.565
  prx Streptococcus pyogenes MGAS315

71.429

67.742

0.484
  prx Streptococcus pyogenes MGAS315

65.854

66.129

0.435
  prx Streptococcus pyogenes MGAS315

65.854

66.129

0.435

Multiple sequence alignment