Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQM35_RS07660 Genome accession   NZ_LS483338
Coordinates   1484421..1484972 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12064     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1479421..1489972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM35_RS07630 (NCTC12064_01507) - 1479846..1480478 (-) 633 WP_031488555.1 nicotinate-nucleotide adenylyltransferase -
  DQM35_RS07635 (NCTC12064_01508) yhbY 1480547..1480855 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  DQM35_RS07640 (NCTC12064_01509) yqeH 1480880..1481998 (-) 1119 WP_015016688.1 ribosome biogenesis GTPase YqeH -
  DQM35_RS07645 (NCTC12064_01510) - 1481998..1482525 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  DQM35_RS07655 - 1482688..1483810 (-) 1123 Protein_1420 ISAs1-like element IS1548 family transposase -
  DQM35_RS07660 (NCTC12064_01513) comX/sigX/comX2/sigX2 1484421..1484972 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1018499 DQM35_RS07660 WP_010921894.1 1484421..1484972(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12064]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1018499 DQM35_RS07660 WP_010921894.1 1484421..1484972(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC12064]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.