Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQL30_RS03220 Genome accession   NZ_LS483333
Coordinates   578510..578692 (+) Length   60 a.a.
NCBI ID   WP_111713703.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12048     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 573510..583692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL30_RS03175 (NCTC12048_00625) - 573524..574126 (+) 603 WP_111713695.1 hypothetical protein -
  DQL30_RS03180 (NCTC12048_00626) - 574137..574910 (+) 774 WP_111713696.1 hypothetical protein -
  DQL30_RS03185 (NCTC12048_00627) - 574920..575141 (+) 222 WP_009880241.1 hypothetical protein -
  DQL30_RS03190 (NCTC12048_00628) - 575141..575800 (+) 660 WP_111713697.1 hypothetical protein -
  DQL30_RS03195 (NCTC12048_00629) - 575958..576488 (+) 531 WP_111713698.1 Panacea domain-containing protein -
  DQL30_RS03200 (NCTC12048_00630) - 576470..577276 (+) 807 WP_111713699.1 hypothetical protein -
  DQL30_RS03205 (NCTC12048_00631) - 577332..577517 (-) 186 WP_111713700.1 helix-turn-helix domain-containing protein -
  DQL30_RS03210 (NCTC12048_00632) - 577514..577993 (-) 480 WP_111713701.1 hypothetical protein -
  DQL30_RS03215 (NCTC12048_00633) - 578026..578334 (-) 309 WP_111713702.1 hypothetical protein -
  DQL30_RS03220 (NCTC12048_00634) prx 578510..578692 (+) 183 WP_111713703.1 Paratox Regulator
  DQL30_RS03225 (NCTC12048_00635) rlmD 578883..580238 (+) 1356 WP_111713704.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  DQL30_RS03230 (NCTC12048_00636) rocA 580902..582257 (+) 1356 WP_002995583.1 transcriptional regulator RocA -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 7024.02 Da        Isoelectric Point: 3.9286

>NTDB_id=1017976 DQL30_RS03220 WP_111713703.1 578510..578692(+) (prx) [Streptococcus pyogenes strain NCTC12048]
MLTYDEFKQAIDDGYITGDTVAIVRKNGQIFDYVLPGEPVRPWEMLMEERVEEVMVELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1017976 DQL30_RS03220 WP_111713703.1 578510..578692(+) (prx) [Streptococcus pyogenes strain NCTC12048]
ATGCTAACATACGATGAGTTTAAGCAAGCTATTGATGACGGGTATATCACAGGAGACACAGTAGCGATTGTGCGCAAAAA
CGGACAGATCTTTGATTATGTGTTGCCTGGTGAGCCTGTTAGACCGTGGGAGATGTTAATGGAAGAAAGAGTGGAAGAAG
TGATGGTGGAATTAGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

85

100

0.85
  prx Streptococcus pyogenes MGAS315

81.667

100

0.817
  prx Streptococcus pyogenes MGAS315

80

100

0.8
  prx Streptococcus pyogenes MGAS8232

73.333

100

0.733
  prx Streptococcus pyogenes MGAS315

71.667

100

0.717
  prx Streptococcus pyogenes MGAS315

87.805

68.333

0.6
  prx Streptococcus pyogenes MGAS315

80.488

68.333

0.55