Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQL25_RS03985 Genome accession   NZ_LS483330
Coordinates   736941..737123 (+) Length   60 a.a.
NCBI ID   WP_014635572.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8328     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 731941..742123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL25_RS03950 (NCTC8328_00786) - 732149..732577 (+) 429 WP_011528780.1 DUF1617 family protein -
  DQL25_RS03955 (NCTC8328_00787) - 732580..733212 (+) 633 WP_011528779.1 hypothetical protein -
  DQL25_RS03960 (NCTC8328_00788) - 733224..733496 (+) 273 WP_011017397.1 hypothetical protein -
  DQL25_RS03965 (NCTC8328_00789) - 733493..733720 (+) 228 WP_111703213.1 phage holin -
  DQL25_RS03970 (NCTC8328_00791) - 733839..735056 (+) 1218 WP_014635574.1 peptidoglycan amidohydrolase family protein -
  DQL25_RS03975 (NCTC8328_00792) speC 735125..735832 (-) 708 WP_002985327.1 streptococcal pyrogenic exotoxin SpeC -
  DQL25_RS03980 (NCTC8328_00793) mf2 735943..736701 (-) 759 WP_014635573.1 DNase Mf2 -
  DQL25_RS03985 (NCTC8328_00794) prx 736941..737123 (+) 183 WP_014635572.1 hypothetical protein Regulator
  DQL25_RS03990 (NCTC8328_00795) - 737654..739516 (+) 1863 WP_111703214.1 heavy metal translocating P-type ATPase -
  DQL25_RS09700 - 739588..739761 (+) 174 WP_011017962.1 hypothetical protein -
  DQL25_RS03995 (NCTC8328_00796) - 739816..740751 (-) 936 WP_032465092.1 dihydroorotate oxidase -
  DQL25_RS04000 (NCTC8328_00797) - 740990..741685 (+) 696 WP_002983928.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 7067.01 Da        Isoelectric Point: 4.1079

>NTDB_id=1017685 DQL25_RS03985 WP_014635572.1 736941..737123(+) (prx) [Streptococcus pyogenes strain NCTC8328]
MLTYDEFKQAIDNGYITGDTVMIVRKNGQIFDYVLPNEKIRDWEVVTDEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1017685 DQL25_RS03985 WP_014635572.1 736941..737123(+) (prx) [Streptococcus pyogenes strain NCTC8328]
ATGCTAACATACGACGAATTTAAGCAAGCAATTGACAACGGATATATCACAGGAGACACAGTTATGATCGTGCGTAAAAA
CGGACAGATTTTTGATTATGTTTTGCCGAATGAGAAGATAAGAGATTGGGAGGTTGTGACAGACGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

90

100

0.9
  prx Streptococcus pyogenes MGAS8232

85

100

0.85
  prx Streptococcus pyogenes MGAS315

80

100

0.8
  prx Streptococcus pyogenes MGAS315

73.333

100

0.733
  prx Streptococcus pyogenes MGAS315

90.244

68.333

0.617
  prx Streptococcus pyogenes MGAS315

85.714

70

0.6
  prx Streptococcus pyogenes MGAS315

78.571

70

0.55