Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABX024_RS08535 Genome accession   NZ_CP160074
Coordinates   1956120..1957352 (-) Length   410 a.a.
NCBI ID   WP_025329863.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951120..1962352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX024_RS08500 (ABX024_12225) - 1951668..1951916 (-) 249 WP_025329856.1 BolA family protein -
  ABX024_RS08505 (ABX024_12220) - 1951971..1952732 (-) 762 WP_370579413.1 ABC transporter permease -
  ABX024_RS08510 (ABX024_12215) - 1952729..1953649 (-) 921 WP_198190459.1 ABC transporter ATP-binding protein -
  ABX024_RS08515 (ABX024_12210) yacG 1953696..1953893 (-) 198 WP_025329859.1 DNA gyrase inhibitor YacG -
  ABX024_RS08520 (ABX024_12205) zapD 1953893..1954645 (-) 753 WP_279027999.1 cell division protein ZapD -
  ABX024_RS08525 (ABX024_12200) coaE 1954651..1955265 (-) 615 WP_367416369.1 dephospho-CoA kinase -
  ABX024_RS08530 (ABX024_12195) pilD 1955262..1956113 (-) 852 WP_370579414.1 A24 family peptidase Machinery gene
  ABX024_RS08535 (ABX024_12190) pilG 1956120..1957352 (-) 1233 WP_025329863.1 type II secretion system F family protein Machinery gene
  ABX024_RS08540 (ABX024_12185) pilF 1957401..1959080 (-) 1680 WP_025329864.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABX024_RS08545 (ABX024_16735) recJ 1959282..1960979 (-) 1698 WP_370579415.1 single-stranded-DNA-specific exonuclease RecJ -
  ABX024_RS08550 (ABX024_16740) - 1960976..1961950 (-) 975 WP_370579416.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45046.94 Da        Isoelectric Point: 9.8445

>NTDB_id=1017645 ABX024_RS08535 WP_025329863.1 1956120..1957352(-) (pilG) [Snodgrassella alvi strain Amel08]
MNKPVAVSKTKSSGTSFSFEGKNLKTEQIVRGEVVAKDEADARAKLTRRQIRVIQIAKVKKQRQKKISQADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQLLLQIRSDVEQGTSLAESFSKHPKYFDHFYCNLVHAGEAGGVLEAILDKLSVY
KEKTQGIKKKVKSALTYPAVVVVVAIALVIVMMMFVLPSFGKVYESMGVPLPGLTQFMMNISNFFVHYGIFVIIALIGGV
IGLFKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWSRTTATLFAAGVPLVEVLDSVAGASGNIRYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKAAEFYEEDVDTAVAQLSSLMEPIIMVVLGGIVGIILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1017645 ABX024_RS08535 WP_025329863.1 1956120..1957352(-) (pilG) [Snodgrassella alvi strain Amel08]
ATGAATAAACCCGTAGCAGTATCCAAAACCAAATCTTCCGGTACCAGTTTCAGTTTTGAAGGCAAAAACCTTAAAACTGA
ACAGATTGTACGCGGAGAAGTTGTCGCAAAAGACGAGGCTGATGCACGCGCCAAGCTAACCCGGCGTCAAATTCGTGTAA
TACAGATTGCCAAGGTCAAAAAACAGCGCCAAAAGAAAATCAGTCAGGCAGATATTACCGTCTTTACCCGGCAATTATCC
ACCATGATGAAATCTGGTCTGCCTATGATGCAGGCTTTCGATATTGCAGCCAAAGGGCATTCCAACCCGGCAATGACCCA
GCTACTGTTGCAAATCCGCTCTGATGTTGAGCAAGGTACATCTCTGGCAGAGTCTTTTTCTAAACATCCGAAATATTTCG
ATCATTTTTACTGTAATCTGGTGCATGCGGGTGAAGCCGGTGGTGTACTAGAGGCTATTCTTGACAAGCTGTCGGTATAT
AAAGAAAAAACTCAGGGTATCAAGAAAAAAGTTAAAAGTGCCTTGACCTACCCAGCTGTGGTAGTAGTCGTAGCAATCGC
ACTGGTAATCGTCATGATGATGTTCGTATTACCTTCATTTGGTAAAGTTTACGAGAGTATGGGCGTACCATTACCTGGTT
TGACTCAGTTCATGATGAATATTTCCAATTTCTTTGTACATTACGGCATATTTGTCATCATTGCACTGATAGGTGGTGTA
ATTGGCTTATTTAAGTGGTATCAGAACTCAGATGATCTGAAAAAACGTTTTGATTATATGCTGTTAAAAATGCCTATTTT
CGGCCAAATCGTTCGTAAAGCCACCATTGCACGCTGGTCTCGTACAACAGCAACTCTATTTGCAGCAGGCGTACCATTGG
TAGAAGTTCTTGATTCAGTTGCCGGAGCCTCCGGTAATATTCGCTATGAAGAAGCTACTCAGGAAATCCGTGCTAAAGTT
AATCAGGGTATTTCTCTTACCTCAGCCATGCAGGCAACAGAGTTGTTTCCGAACATGGTGATGCAAATGGCTTCAATCGG
TGAAGAATCAGGTTCTTTGGATGACATGCTCAATAAAGCCGCAGAATTCTATGAAGAAGATGTAGATACTGCCGTTGCAC
AACTGTCTTCATTGATGGAACCGATTATTATGGTTGTACTTGGTGGTATTGTCGGGATAATTCTGGTTGCCATGTATTTA
CCGCTATTTAATATCGGTAATGCTGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

64.885

95.854

0.622
  pilG Neisseria meningitidis 44/76-A

64.122

95.854

0.615
  pilC Legionella pneumophila strain ERS1305867

48.12

97.317

0.468
  pilC Acinetobacter baylyi ADP1

44.361

97.317

0.432
  pilC Acinetobacter baumannii D1279779

44.361

97.317

0.432
  pilC Pseudomonas stutzeri DSM 10701

41.855

97.317

0.407
  pilC Vibrio cholerae strain A1552

38.06

98.049

0.373

Multiple sequence alignment