Detailed information NTG1017644

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABX024_RS08530
• Genome accession: NZ_CP160074
• Coordinates: 1955262..1956113 (-)
• Length: 283 a.a.
• NCBI ID: WP_370579414.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1950262..1961113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX024_RS08495 (ABX024_12230)	murA	1950369..1951628 (-)	1260	WP_370579412.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABX024_RS08500 (ABX024_12225)	-	1951668..1951916 (-)	249	WP_025329856.1	BolA family protein	-
ABX024_RS08505 (ABX024_12220)	-	1951971..1952732 (-)	762	WP_370579413.1	ABC transporter permease	-
ABX024_RS08510 (ABX024_12215)	-	1952729..1953649 (-)	921	WP_198190459.1	ABC transporter ATP-binding protein	-
ABX024_RS08515 (ABX024_12210)	yacG	1953696..1953893 (-)	198	WP_025329859.1	DNA gyrase inhibitor YacG	-
ABX024_RS08520 (ABX024_12205)	zapD	1953893..1954645 (-)	753	WP_279027999.1	cell division protein ZapD	-
ABX024_RS08525 (ABX024_12200)	coaE	1954651..1955265 (-)	615	WP_367416369.1	dephospho-CoA kinase	-
ABX024_RS08530 (ABX024_12195)	pilD	1955262..1956113 (-)	852	WP_370579414.1	A24 family peptidase	Machinery gene
ABX024_RS08535 (ABX024_12190)	pilG	1956120..1957352 (-)	1233	WP_025329863.1	type II secretion system F family protein	Machinery gene
ABX024_RS08540 (ABX024_12185)	pilF	1957401..1959080 (-)	1680	WP_025329864.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABX024_RS08545 (ABX024_16735)	recJ	1959282..1960979 (-)	1698	WP_370579415.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31266.19 Da
• Isoelectric Point: 8.0985

>NTDB_id=1017644 ABX024_RS08530 WP_370579414.1 1955262..1956113(-) (pilD) [Snodgrassella alvi strain Amel08]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAEHTSHFNLCVPHSACPHCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPVAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLVL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIHWWLRLSGFST

Nucleotide

• Length: 852 bp

>NTDB_id=1017644 ABX024_RS08530 WP_370579414.1 1955262..1956113(-) (pilD) [Snodgrassella alvi strain Amel08]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCAGGCAGAAGCACGAATGGCATTGCAACTGCCTGCAGAACACACCA
GTCACTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGCACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTT
GTCAGTTATATACTGCTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCGCGCTATTTTTGCGTGGAATTATT
AACCGGTATTGCATTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTGTTGCTGCGGGCGGTCTGATACTGACTGCCG
CACTGATTGCACTGACCTTTATAGATGCTGAAACCCAGCTGTTGCCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAATTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCATTAGGCTATCTGAGCTTGTG
GTCACTTTTCTGGTTATTCAAACTACTAACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCTGCATTGCCTTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTGTTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCCGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTCACTGGTGGCTGCGTCTTTCCGGGTTTAGTACATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.716	94.7	0.537
pilD	Vibrio cholerae strain A1552	49.104	98.587	0.484
pilD	Acinetobacter baumannii D1279779	50.185	95.76	0.481
pilD	Acinetobacter nosocomialis M2	50.185	95.76	0.481
pilD	Vibrio campbellii strain DS40M4	46.494	95.76	0.445