Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQL27_RS08010 Genome accession   NZ_LS483329
Coordinates   1573479..1574747 (+) Length   422 a.a.
NCBI ID   WP_031488602.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1568479..1579747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL27_RS07985 (NCTC12058_01584) - 1568646..1569395 (-) 750 WP_031488598.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DQL27_RS07990 (NCTC12058_01585) prmA 1569395..1570348 (-) 954 WP_031488599.1 50S ribosomal protein L11 methyltransferase -
  DQL27_RS07995 (NCTC12058_01586) - 1570419..1570889 (-) 471 WP_002987990.1 DUF3013 family protein -
  DQL27_RS08000 (NCTC12058_01587) pabB 1571090..1572847 (+) 1758 WP_031488600.1 aminodeoxychorismate synthase component I -
  DQL27_RS08005 (NCTC12058_01588) - 1572880..1573446 (+) 567 WP_031488601.1 aminodeoxychorismate/anthranilate synthase component II -
  DQL27_RS08010 (NCTC12058_01589) rarA 1573479..1574747 (+) 1269 WP_031488602.1 replication-associated recombination protein A Machinery gene
  DQL27_RS08025 (NCTC12058_01592) - 1575246..1575686 (+) 441 WP_031488603.1 GNAT family N-acetyltransferase -
  DQL27_RS08030 (NCTC12058_01593) - 1575741..1576247 (+) 507 WP_023611832.1 DNA topology modulation protein -
  DQL27_RS08035 (NCTC12058_01594) - 1576496..1577197 (+) 702 WP_031488605.1 exotoxin beta-grasp domain-containing protein -
  DQL27_RS08040 (NCTC12058_01595) - 1577523..1577747 (-) 225 WP_031488606.1 hypothetical protein -
  DQL27_RS08045 (NCTC12058_01596) - 1577926..1579554 (+) 1629 WP_031488607.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46603.03 Da        Isoelectric Point: 6.3774

>NTDB_id=1017623 DQL27_RS08010 WP_031488602.1 1573479..1574747(+) (rarA) [Streptococcus pyogenes strain NCTC12058]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLKTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1017623 DQL27_RS08010 WP_031488602.1 1573479..1574747(+) (rarA) [Streptococcus pyogenes strain NCTC12058]
ATGCCTGATCACTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATAGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCTCCTAAATCAAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAAAACATCAGG
TAACCTCCCTATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.233

98.815

0.585

Multiple sequence alignment