Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABX025_RS07580 Genome accession   NZ_CP160073
Coordinates   1662629..1663861 (+) Length   410 a.a.
NCBI ID   WP_084547381.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1657629..1668861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX025_RS07565 (ABX025_14340) - 1658034..1659008 (+) 975 WP_369432851.1 hypothetical protein -
  ABX025_RS07570 (ABX025_14345) recJ 1659005..1660702 (+) 1698 WP_371751718.1 single-stranded-DNA-specific exonuclease RecJ -
  ABX025_RS07575 (ABX025_14355) pilF 1660903..1662582 (+) 1680 WP_371751717.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABX025_RS07580 (ABX025_14360) pilG 1662629..1663861 (+) 1233 WP_084547381.1 type II secretion system F family protein Machinery gene
  ABX025_RS07585 (ABX025_14365) pilD 1663868..1664719 (+) 852 WP_367449354.1 A24 family peptidase Machinery gene
  ABX025_RS07590 (ABX025_14370) coaE 1664716..1665330 (+) 615 WP_078475026.1 dephospho-CoA kinase -
  ABX025_RS07595 (ABX025_14375) zapD 1665336..1666088 (+) 753 WP_025329860.1 cell division protein ZapD -
  ABX025_RS07600 (ABX025_14380) yacG 1666088..1666285 (+) 198 WP_078475027.1 DNA gyrase inhibitor YacG -
  ABX025_RS07605 (ABX025_14385) - 1666332..1667252 (+) 921 WP_025329858.1 ABC transporter ATP-binding protein -
  ABX025_RS07610 (ABX025_14390) - 1667249..1668010 (+) 762 WP_078475028.1 ABC transporter permease -
  ABX025_RS07615 (ABX025_14395) - 1668065..1668313 (+) 249 WP_025329856.1 BolA family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44959.82 Da        Isoelectric Point: 9.7594

>NTDB_id=1017623 ABX025_RS07580 WP_084547381.1 1662629..1663861(+) (pilG) [Snodgrassella alvi strain Amel09]
MNKPVAVSKTKSSGTSFSFEGKNLKTEQIVRGEVVAKDEADARAKLTRRQIRVIQIAKVKKQRQKKISQADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQLLLQIRSDVEQGTSLAESFAKHPKYFDHFYCNLVHAGEAGGVLEAILDKLSVY
KEKTQGIKKKVKSALTYPAVVVVVAIALVIVMMMFVLPSFGKVYEGMGVPLPGLTQFMMNISDFFVHYGVFVIIALIGGA
IGLFKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWSRTTATLFAAGVPLVEVLDSVAGASGNIRYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKAAEFYEEDVDTAVAQLSSLMEPIIMVVLGGIVGIILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1017623 ABX025_RS07580 WP_084547381.1 1662629..1663861(+) (pilG) [Snodgrassella alvi strain Amel09]
ATGAATAAACCCGTAGCAGTATCCAAAACCAAATCCTCCGGAACCAGTTTCAGTTTTGAAGGTAAAAATCTTAAAACTGA
ACAGATTGTACGCGGAGAAGTTGTCGCAAAAGACGAGGCTGATGCACGCGCCAAGCTAACCCGGCGTCAAATTCGTGTAA
TACAGATTGCCAAGGTCAAAAAACAGCGCCAAAAGAAAATCAGTCAGGCAGATATTACCGTCTTTACCCGGCAATTATCC
ACCATGATGAAATCCGGTCTGCCTATGATGCAGGCTTTCGATATTGCAGCCAAAGGCCATTCTAACCCGGCAATGACCCA
GCTACTGTTGCAAATCCGCTCTGATGTTGAGCAAGGTACATCTCTGGCAGAGTCTTTTGCCAAACATCCGAAATATTTCG
ATCATTTTTACTGTAATCTGGTGCATGCGGGTGAAGCCGGTGGTGTACTAGAGGCTATTCTTGACAAGCTGTCAGTATAT
AAAGAAAAAACTCAGGGTATCAAGAAAAAAGTTAAAAGTGCCTTGACCTACCCAGCTGTAGTTGTAGTTGTTGCAATTGC
ACTGGTAATCGTCATGATGATGTTCGTATTACCTTCATTCGGTAAAGTTTACGAGGGTATGGGCGTACCATTACCTGGTT
TAACTCAGTTCATGATGAATATTTCCGATTTCTTTGTACATTACGGCGTATTTGTCATCATCGCACTGATAGGTGGTGCA
ATTGGCTTATTTAAGTGGTATCAGAACTCAGATGATCTGAAAAAACGTTTTGATTATATGCTGTTAAAAATGCCTATTTT
CGGCCAAATCGTTCGTAAAGCCACCATTGCACGCTGGTCTCGTACAACAGCAACTCTATTTGCAGCAGGCGTACCATTGG
TAGAAGTTCTTGATTCAGTTGCCGGAGCTTCCGGTAATATTCGCTATGAAGAAGCTACTCAGGAAATCCGTGCCAAAGTT
AATCAGGGTATTTCTCTTACCTCAGCCATGCAGGCAACAGAGTTGTTTCCGAACATGGTGATGCAAATGGCGTCAATCGG
TGAAGAATCAGGTTCTTTGGATGACATGCTCAATAAGGCCGCAGAATTCTATGAAGAAGATGTAGATACTGCCGTTGCAC
AACTGTCTTCATTGATGGAACCGATTATTATGGTTGTACTCGGTGGTATTGTCGGGATAATTCTGGTTGCCATGTATTTA
CCGCTATTTAATATCGGTAATGCCGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria meningitidis 44/76-A

64.975

96.098

0.624
  pilG Neisseria gonorrhoeae MS11

64.885

95.854

0.622
  pilC Legionella pneumophila strain ERS1305867

48.12

97.317

0.468
  pilC Acinetobacter baylyi ADP1

44.11

97.317

0.429
  pilC Acinetobacter baumannii D1279779

44.11

97.317

0.429
  pilC Pseudomonas stutzeri DSM 10701

42.105

97.317

0.41
  pilC Vibrio cholerae strain A1552

38.308

98.049

0.376

Multiple sequence alignment