Detailed information NTG1017586

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABX022_RS04405
• Genome accession: NZ_CP160072
• Coordinates: 1009170..1010021 (-)
• Length: 283 a.a.
• NCBI ID: WP_198224850.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1004170..1015021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX022_RS04370 (ABX022_02350)	murA	1004279..1005538 (-)	1260	WP_370580577.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABX022_RS04375 (ABX022_02345)	-	1005578..1005826 (-)	249	WP_025329856.1	BolA family protein	-
ABX022_RS04380 (ABX022_02340)	-	1005879..1006640 (-)	762	WP_367483183.1	ABC transporter permease	-
ABX022_RS04385 (ABX022_02335)	-	1006637..1007557 (-)	921	WP_025329858.1	ABC transporter ATP-binding protein	-
ABX022_RS04390 (ABX022_02330)	yacG	1007604..1007801 (-)	198	WP_078475027.1	DNA gyrase inhibitor YacG	-
ABX022_RS04395 (ABX022_02325)	zapD	1007801..1008553 (-)	753	WP_025329860.1	cell division protein ZapD	-
ABX022_RS04400 (ABX022_02320)	coaE	1008559..1009173 (-)	615	WP_084565125.1	dephospho-CoA kinase	-
ABX022_RS04405 (ABX022_02315)	pilD	1009170..1010021 (-)	852	WP_198224850.1	A24 family peptidase	Machinery gene
ABX022_RS04410 (ABX022_02310)	pilG	1010028..1011260 (-)	1233	WP_370580578.1	type II secretion system F family protein	Machinery gene
ABX022_RS04415 (ABX022_02305)	pilF	1011307..1012986 (-)	1680	WP_198224852.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABX022_RS04420 (ABX022_02300)	recJ	1013187..1014884 (-)	1698	WP_367483178.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31348.33 Da
• Isoelectric Point: 8.2873

>NTDB_id=1017586 ABX022_RS04405 WP_198224850.1 1009170..1010021(-) (pilD) [Snodgrassella alvi strain Amel07]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAEHTSRFNLCVPHSACPYCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPVAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLIL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIYWWLRLSGFNA

Nucleotide

• Length: 852 bp

>NTDB_id=1017586 ABX022_RS04405 WP_198224850.1 1009170..1010021(-) (pilD) [Snodgrassella alvi strain Amel07]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCAGGCAGAAGCACGAATGGCATTGCAACTGCCTGCAGAACACACCA
GTCGCTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGTACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTT
GTCAGTTATATACTGCTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCGCGCTATTTTTGTGTTGAATTATT
AACCGGTATTGCATTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTGTTGCTGCGGGCGGTCTGATACTGACTGCAG
CACTGATTGCACTGACCTTTATAGATGCCGAAACCCAGCTGTTGCCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAGTTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCGTTGGGCTATCTGAGCTTATG
GTCACTTTTCTGGTTATTCAAACTGCTGACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCGGCATTGCCCTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTATTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCAGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTTACTGGTGGCTGCGTCTTTCCGGGTTTAATGCATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.343	94.7	0.534
pilD	Acinetobacter baumannii D1279779	50.923	95.76	0.488
pilD	Acinetobacter nosocomialis M2	50.554	95.76	0.484
pilD	Vibrio cholerae strain A1552	49.815	95.76	0.477
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449