Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABX016_RS03815 Genome accession   NZ_CP160071
Coordinates   879406..880638 (-) Length   410 a.a.
NCBI ID   WP_370580578.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 874406..885638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX016_RS03780 (ABX016_00840) - 874956..875204 (-) 249 WP_025329856.1 BolA family protein -
  ABX016_RS03785 (ABX016_00835) - 875257..876018 (-) 762 WP_084565126.1 ABC transporter permease -
  ABX016_RS03790 (ABX016_00830) - 876015..876935 (-) 921 WP_025329858.1 ABC transporter ATP-binding protein -
  ABX016_RS03795 (ABX016_00825) yacG 876982..877179 (-) 198 WP_078475027.1 DNA gyrase inhibitor YacG -
  ABX016_RS03800 (ABX016_00820) zapD 877179..877931 (-) 753 WP_025329860.1 cell division protein ZapD -
  ABX016_RS03805 (ABX016_00815) coaE 877937..878551 (-) 615 WP_367414827.1 dephospho-CoA kinase -
  ABX016_RS03810 (ABX016_00810) pilD 878548..879399 (-) 852 WP_367414826.1 A24 family peptidase Machinery gene
  ABX016_RS03815 (ABX016_00805) pilG 879406..880638 (-) 1233 WP_370580578.1 type II secretion system F family protein Machinery gene
  ABX016_RS03820 (ABX016_00800) pilF 880685..882364 (-) 1680 WP_198224852.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABX016_RS03825 (ABX016_00795) recJ 882565..884262 (-) 1698 WP_370581283.1 single-stranded-DNA-specific exonuclease RecJ -
  ABX016_RS03830 (ABX016_16925) - 884259..885233 (-) 975 WP_198190462.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45033.90 Da        Isoelectric Point: 9.7594

>NTDB_id=1017561 ABX016_RS03815 WP_370580578.1 879406..880638(-) (pilG) [Snodgrassella alvi strain Amel06]
MNKPVAVSKTKSSGTSFSFEGKNLKTEQIVRGEVVAKDEADARAKLTRRQIRVIQITKVKKQRQKKISQADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQLLLQIRSDVEQGTSLAESFAKHPKYFDHFYCNLVHAGEAGGVLEAILDKLSVY
KEKTQGIKKKVKSALTYPAVVVVVAIALVIVMMMFVLPSFGKVYESMGVPLPGLTQFMMNISDFFVHYGIFVIIALIGGA
IGLFKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWSRTTATLFAAGVPLVEVLDSVAGASGNIRYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKAAEFYEEDVDTAVAQLSSLMEPIIMVVLGGIVGIILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1017561 ABX016_RS03815 WP_370580578.1 879406..880638(-) (pilG) [Snodgrassella alvi strain Amel06]
ATGAATAAACCCGTAGCAGTATCCAAAACCAAATCCTCCGGTACCAGTTTCAGTTTTGAAGGCAAAAACCTTAAAACTGA
ACAGATTGTACGCGGAGAAGTTGTCGCAAAAGACGAGGCTGATGCACGCGCCAAGCTAACCCGGCGTCAAATTCGTGTAA
TACAGATTACCAAGGTCAAAAAACAGCGCCAAAAGAAAATCAGTCAGGCAGATATTACCGTCTTTACCCGGCAATTATCC
ACCATGATGAAATCCGGTCTGCCTATGATGCAGGCTTTCGATATTGCAGCCAAAGGCCATTCTAACCCGGCAATGACCCA
GCTACTGTTGCAAATCCGCTCTGATGTTGAGCAAGGTACATCTCTGGCAGAGTCTTTTGCCAAACATCCGAAATATTTCG
ATCATTTTTACTGTAATCTGGTGCATGCGGGTGAAGCCGGTGGTGTACTAGAGGCTATTCTTGACAAGCTGTCGGTATAT
AAAGAAAAAACTCAGGGTATCAAGAAAAAAGTTAAAAGTGCCTTGACCTACCCAGCTGTAGTTGTAGTTGTTGCAATTGC
ACTGGTAATCGTCATGATGATGTTCGTATTACCTTCATTTGGTAAAGTTTACGAGAGTATGGGCGTACCATTACCTGGTT
TGACTCAGTTCATGATGAATATTTCCGATTTCTTTGTACATTACGGCATATTTGTCATCATTGCACTGATAGGTGGTGCA
ATTGGCTTATTTAAATGGTATCAGAACTCAGATGATCTGAAAAAACGTTTTGATTATATGCTGTTAAAAATGCCCATTTT
CGGCCAAATCGTTCGTAAAGCCACCATTGCACGCTGGTCTCGTACAACAGCAACTCTATTTGCAGCAGGCGTACCATTAG
TAGAAGTTCTTGATTCAGTTGCCGGAGCCTCCGGTAATATTCGCTATGAAGAAGCTACTCAGGAAATCCGTGCTAAAGTT
AATCAGGGTATTTCTCTTACCTCAGCCATGCAGGCAACAGAGTTGTTTCCGAACATGGTGATGCAAATGGCTTCAATCGG
TGAAGAATCAGGTTCTTTGGATGACATGCTCAATAAGGCCGCAGAATTCTATGAAGAAGATGTAGATACTGCCGTTGCAC
AACTGTCTTCATTGATGGAACCGATTATTATGGTTGTACTCGGTGGTATTGTCGGGATAATTCTGGTTGCCATGTATTTA
CCGCTATTTAATATCGGTAATGCCGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria meningitidis 44/76-A

65.228

96.098

0.627
  pilG Neisseria gonorrhoeae MS11

65.14

95.854

0.624
  pilC Legionella pneumophila strain ERS1305867

47.87

97.317

0.466
  pilC Acinetobacter baylyi ADP1

44.361

97.317

0.432
  pilC Acinetobacter baumannii D1279779

44.361

97.317

0.432
  pilC Pseudomonas stutzeri DSM 10701

42.105

97.317

0.41
  pilC Vibrio cholerae strain A1552

38.06

98.049

0.373

Multiple sequence alignment