Detailed information NTG1017560

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABX016_RS03810
• Genome accession: NZ_CP160071
• Coordinates: 878548..879399 (-)
• Length: 283 a.a.
• NCBI ID: WP_367414826.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 873548..884399

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX016_RS03775 (ABX016_00845)	murA	873657..874916 (-)	1260	WP_367414828.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABX016_RS03780 (ABX016_00840)	-	874956..875204 (-)	249	WP_025329856.1	BolA family protein	-
ABX016_RS03785 (ABX016_00835)	-	875257..876018 (-)	762	WP_084565126.1	ABC transporter permease	-
ABX016_RS03790 (ABX016_00830)	-	876015..876935 (-)	921	WP_025329858.1	ABC transporter ATP-binding protein	-
ABX016_RS03795 (ABX016_00825)	yacG	876982..877179 (-)	198	WP_078475027.1	DNA gyrase inhibitor YacG	-
ABX016_RS03800 (ABX016_00820)	zapD	877179..877931 (-)	753	WP_025329860.1	cell division protein ZapD	-
ABX016_RS03805 (ABX016_00815)	coaE	877937..878551 (-)	615	WP_367414827.1	dephospho-CoA kinase	-
ABX016_RS03810 (ABX016_00810)	pilD	878548..879399 (-)	852	WP_367414826.1	A24 family peptidase	Machinery gene
ABX016_RS03815 (ABX016_00805)	pilG	879406..880638 (-)	1233	WP_370580578.1	type II secretion system F family protein	Machinery gene
ABX016_RS03820 (ABX016_00800)	pilF	880685..882364 (-)	1680	WP_198224852.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABX016_RS03825 (ABX016_00795)	recJ	882565..884262 (-)	1698	WP_370581283.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31378.36 Da
• Isoelectric Point: 8.2873

>NTDB_id=1017560 ABX016_RS03810 WP_367414826.1 878548..879399(-) (pilD) [Snodgrassella alvi strain Amel06]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWQAEARMTLQLPAEHTSRFNLCVPHSACPYCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPVAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLIL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIYWWLRLSGFNA

Nucleotide

• Length: 852 bp

>NTDB_id=1017560 ABX016_RS03810 WP_367414826.1 878548..879399(-) (pilD) [Snodgrassella alvi strain Amel06]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCAGGCAGAAGCACGAATGACATTGCAACTGCCTGCAGAACACACCA
GTCGCTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGTACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTT
GTCAGTTATATACTGCTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCGCGCTATTTTTGTGTTGAATTATT
AACCGGTATTGCATTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTGTTGCTGCGGGCGGTCTGATACTGACTGCAG
CACTGATTGCACTGACCTTTATAGATGCCGAAACCCAGCTGTTGCCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAGTTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCGTTGGGCTATCTGAGCTTATG
GTCACTTTTCTGGTTATTCAAACTGCTGACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCGGCATTGCCCTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTATTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCAGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTTACTGGTGGCTGCGTCTTTCCGGGTTTAATGCATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.343	94.7	0.534
pilD	Acinetobacter baumannii D1279779	50.923	95.76	0.488
pilD	Acinetobacter nosocomialis M2	50.554	95.76	0.484
pilD	Vibrio cholerae strain A1552	49.815	95.76	0.477
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449