Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB0R62_RS10830 Genome accession   NZ_CP160002
Coordinates   2119830..2120300 (-) Length   156 a.a.
NCBI ID   WP_000934764.1    Uniprot ID   A0A9P4DKA4
Organism   Staphylococcus aureus strain Newman D2C HOM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2114830..2125300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R62_RS10760 (AB0R62_10760) - 2115105..2115521 (-) 417 WP_000590122.1 hypothetical protein -
  AB0R62_RS10765 (AB0R62_10765) - 2115549..2115749 (-) 201 WP_000265043.1 DUF1514 family protein -
  AB0R62_RS10770 (AB0R62_10770) rinB 2115749..2115898 (-) 150 WP_000595265.1 transcriptional activator RinB -
  AB0R62_RS10775 (AB0R62_10775) - 2115895..2116281 (-) 387 WP_000592210.1 hypothetical protein -
  AB0R62_RS10780 (AB0R62_10780) - 2116278..2116484 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  AB0R62_RS10785 (AB0R62_10785) - 2116521..2117063 (-) 543 WP_000185659.1 dUTP diphosphatase -
  AB0R62_RS10790 (AB0R62_10790) - 2117056..2117238 (-) 183 WP_000028422.1 hypothetical protein -
  AB0R62_RS10795 (AB0R62_10795) - 2117228..2117479 (-) 252 WP_001065091.1 DUF1024 family protein -
  AB0R62_RS10800 (AB0R62_10800) - 2117472..2117645 (-) 174 WP_001793974.1 hypothetical protein -
  AB0R62_RS10805 (AB0R62_10805) - 2117651..2117893 (-) 243 WP_000131366.1 SAV1978 family virulence-associated passenger protein -
  AB0R62_RS10810 (AB0R62_10810) - 2117897..2118265 (-) 369 WP_000101274.1 SA1788 family PVL leukocidin-associated protein -
  AB0R62_RS10815 (AB0R62_10815) - 2118278..2118682 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  AB0R62_RS10820 (AB0R62_10820) - 2118691..2118909 (-) 219 WP_000338530.1 hypothetical protein -
  AB0R62_RS10825 (AB0R62_10825) - 2118916..2119800 (-) 885 WP_000148316.1 DnaD domain protein -
  AB0R62_RS10830 (AB0R62_10830) ssbA 2119830..2120300 (-) 471 WP_000934764.1 single-stranded DNA-binding protein Machinery gene
  AB0R62_RS10835 (AB0R62_10835) - 2120301..2120918 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  AB0R62_RS10840 (AB0R62_10840) - 2120999..2121919 (-) 921 WP_000138472.1 recombinase RecT -
  AB0R62_RS10845 (AB0R62_10845) - 2121921..2123864 (-) 1944 WP_000700577.1 AAA family ATPase -
  AB0R62_RS10850 (AB0R62_10850) - 2123873..2124136 (-) 264 WP_001205732.1 hypothetical protein -
  AB0R62_RS10855 (AB0R62_10855) - 2124145..2124405 (-) 261 WP_000291503.1 DUF1108 family protein -
  AB0R62_RS10860 (AB0R62_10860) - 2124386..2124712 (-) 327 WP_000165362.1 DUF2482 family protein -
  AB0R62_RS10865 (AB0R62_10865) - 2124807..2124968 (-) 162 WP_000066017.1 DUF1270 domain-containing protein -
  AB0R62_RS10870 (AB0R62_10870) - 2124965..2125285 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17627.49 Da        Isoelectric Point: 5.2672

>NTDB_id=1017035 AB0R62_RS10830 WP_000934764.1 2119830..2120300(-) (ssbA) [Staphylococcus aureus strain Newman D2C HOM]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1017035 AB0R62_RS10830 WP_000934764.1 2119830..2120300(-) (ssbA) [Staphylococcus aureus strain Newman D2C HOM]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Neisseria meningitidis MC58

33.526

100

0.372
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.372
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Vibrio cholerae strain A1552

31.492

100

0.365

Multiple sequence alignment