Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ABVT50_RS02625 Genome accession   NZ_CP159888
Coordinates   623377..624609 (-) Length   410 a.a.
NCBI ID   WP_100156468.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 618377..629609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVT50_RS02590 (ABVT50_09030) - 618923..619171 (-) 249 WP_100140843.1 BolA family protein -
  ABVT50_RS02595 (ABVT50_15525) - 619228..619983 (-) 756 WP_100140882.1 ABC transporter permease -
  ABVT50_RS02600 (ABVT50_09015) - 619986..620903 (-) 918 WP_100156465.1 ABC transporter ATP-binding protein -
  ABVT50_RS02605 (ABVT50_09010) yacG 620953..621150 (-) 198 WP_100140841.1 DNA gyrase inhibitor YacG -
  ABVT50_RS02610 (ABVT50_15530) zapD 621150..621902 (-) 753 WP_367430673.1 cell division protein ZapD -
  ABVT50_RS02615 (ABVT50_08990) coaE 621908..622522 (-) 615 WP_100156466.1 dephospho-CoA kinase -
  ABVT50_RS02620 (ABVT50_08985) pilD 622519..623370 (-) 852 WP_369608785.1 A24 family peptidase Machinery gene
  ABVT50_RS02625 (ABVT50_08980) pilG 623377..624609 (-) 1233 WP_100156468.1 type II secretion system F family protein Machinery gene
  ABVT50_RS02630 (ABVT50_08975) pilF 624656..626335 (-) 1680 WP_267408994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABVT50_RS02635 (ABVT50_08970) recJ 626535..628232 (-) 1698 WP_370659345.1 single-stranded-DNA-specific exonuclease RecJ -
  ABVT50_RS02640 (ABVT50_15535) - 628229..629203 (-) 975 WP_369608787.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45158.33 Da        Isoelectric Point: 9.9541

>NTDB_id=1016618 ABVT50_RS02625 WP_100156468.1 623377..624609(-) (pilG) [Snodgrassella alvi strain Acer04]
MNKPVAVSKAKSTGISYSFEGKNIKTEQIVRGEVVAKDEAEARAKLNRRQIRVIQINKVKKQRQKKISPADITVFTRQLS
TMMKSGLPMMQAFDIAAKGHSNPAMTQMLMQIRSDVEQGTSLADSFAKYPKYFDRFYCNLVRAGETGGVLEAILDKLAVY
KEKTQGIKKKVKSALTYPVVVVVVAIALVIVMMMFVLPSFGKVYEGMGVPLPGLTQFMMNISNFFVHFGVFIIIALIAGV
IGLIKWYQNSDDLKKRFDYMLLKMPIFGQIVRKATIARWARTTATLFAAGVPLVEVLDSVAGAAGNIKYEEATQEIRAKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDDMLNKSAEFYEEDVDTAVSQLSSLMEPIIMVVLGLIVGVILVAMYL
PLFNIGNAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1016618 ABVT50_RS02625 WP_100156468.1 623377..624609(-) (pilG) [Snodgrassella alvi strain Acer04]
ATGAACAAACCAGTAGCAGTATCCAAAGCTAAATCTACCGGCATCAGCTACAGCTTTGAAGGAAAAAACATCAAAACTGA
GCAGATTGTACGCGGCGAAGTAGTGGCAAAAGATGAGGCAGAAGCCCGTGCCAAACTTAACCGACGACAGATTCGTGTCA
TTCAGATTAACAAAGTCAAAAAACAGCGTCAGAAAAAAATCAGTCCGGCGGATATAACAGTCTTTACTCGACAATTATCA
ACCATGATGAAATCCGGTTTACCGATGATGCAGGCTTTTGATATCGCAGCCAAAGGCCACTCAAACCCTGCTATGACCCA
AATGCTGATGCAAATCCGTTCTGATGTTGAGCAGGGTACATCATTAGCTGATTCTTTTGCCAAATATCCAAAGTATTTTG
ATCGATTTTATTGCAATCTGGTACGTGCAGGCGAAACAGGCGGTGTATTGGAAGCCATATTAGATAAACTGGCCGTATAC
AAAGAAAAAACTCAAGGAATCAAGAAAAAGGTTAAAAGTGCTTTGACCTATCCGGTAGTAGTGGTAGTTGTCGCAATTGC
ACTGGTAATCGTCATGATGATGTTCGTTTTACCATCATTCGGTAAAGTTTACGAAGGTATGGGCGTTCCTCTGCCAGGGC
TTACACAATTCATGATGAATATTTCTAATTTCTTTGTCCACTTTGGTGTATTTATTATCATTGCACTCATTGCAGGTGTA
ATTGGACTAATAAAATGGTATCAGAACTCAGATGATTTGAAAAAACGTTTTGATTATATGTTATTGAAAATGCCCATTTT
TGGACAGATCGTACGTAAAGCCACAATTGCCCGCTGGGCGCGCACAACAGCAACCTTGTTTGCTGCCGGCGTACCCTTAG
TAGAAGTACTTGACTCAGTTGCCGGAGCAGCGGGCAATATCAAATATGAAGAAGCGACACAGGAAATTCGGGCCAAGGTT
AATCAGGGTATTTCCCTCACCTCTGCCATGCAGGCTACTGAATTATTTCCCAATATGGTGATGCAAATGGCCTCTATTGG
CGAAGAGTCCGGATCACTTGATGATATGTTAAATAAATCAGCCGAATTTTATGAAGAAGATGTAGATACTGCTGTTTCAC
AGCTATCCTCTTTGATGGAACCCATTATCATGGTAGTACTGGGTTTGATCGTCGGTGTTATTCTGGTTGCTATGTATTTA
CCACTCTTTAACATCGGTAATGCAGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

65.394

95.854

0.627
  pilG Neisseria meningitidis 44/76-A

64.631

95.854

0.62
  pilC Legionella pneumophila strain ERS1305867

47

97.561

0.459
  pilC Acinetobacter baumannii D1279779

43.609

97.317

0.424
  pilC Acinetobacter baylyi ADP1

42.965

97.073

0.417
  pilC Pseudomonas stutzeri DSM 10701

41.604

97.317

0.405
  pilC Vibrio cholerae strain A1552

38.557

98.049

0.378

Multiple sequence alignment