Detailed information NTG1016617

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABVT50_RS02620
• Genome accession: NZ_CP159888
• Coordinates: 622519..623370 (-)
• Length: 283 a.a.
• NCBI ID: WP_369608785.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer04
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 617519..628370

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVT50_RS02585 (ABVT50_09035)	murA	617623..618879 (-)	1257	WP_369608784.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABVT50_RS02590 (ABVT50_09030)	-	618923..619171 (-)	249	WP_100140843.1	BolA family protein	-
ABVT50_RS02595 (ABVT50_15525)	-	619228..619983 (-)	756	WP_100140882.1	ABC transporter permease	-
ABVT50_RS02600 (ABVT50_09015)	-	619986..620903 (-)	918	WP_100156465.1	ABC transporter ATP-binding protein	-
ABVT50_RS02605 (ABVT50_09010)	yacG	620953..621150 (-)	198	WP_100140841.1	DNA gyrase inhibitor YacG	-
ABVT50_RS02610 (ABVT50_15530)	zapD	621150..621902 (-)	753	WP_367430673.1	cell division protein ZapD	-
ABVT50_RS02615 (ABVT50_08990)	coaE	621908..622522 (-)	615	WP_100156466.1	dephospho-CoA kinase	-
ABVT50_RS02620 (ABVT50_08985)	pilD	622519..623370 (-)	852	WP_369608785.1	A24 family peptidase	Machinery gene
ABVT50_RS02625 (ABVT50_08980)	pilG	623377..624609 (-)	1233	WP_100156468.1	type II secretion system F family protein	Machinery gene
ABVT50_RS02630 (ABVT50_08975)	pilF	624656..626335 (-)	1680	WP_267408994.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABVT50_RS02635 (ABVT50_08970)	recJ	626535..628232 (-)	1698	WP_370659345.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31142.15 Da
• Isoelectric Point: 7.5760

>NTDB_id=1016617 ABVT50_RS02620 WP_369608785.1 622519..623370(-) (pilD) [Snodgrassella alvi strain Acer04]
MLSDTLFFSIIALITGLAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAENFACFNLCVPPSACPHCQHKIRWWQNIPL
ISYLLLHGRCAACAKPISPRYFCVELLTGLAFAAVIWRYDVTPVAAGGLVLTAALITLTFIDADTQLLPDQITLPLLWLG
LLFNWYSEFVSLSAAIWGAVAGYMSLWSLFWLFKLITGKDGMGYGDFKLLAALGAWMGAAALPLIVFIAAIVGIIASLIL
KVARSQPMAFGPALAISGWIVWMANSQISQLIHWWLQLSGFDA

Nucleotide

• Length: 852 bp

>NTDB_id=1016617 ABVT50_RS02620 WP_369608785.1 622519..623370(-) (pilD) [Snodgrassella alvi strain Acer04]
ATGTTATCAGATACACTGTTTTTCTCCATCATCGCATTAATAACAGGTTTAGCTGTAGGCAGCTTTCTGAACGTAGTCAT
CTATCGTCTGCCGATCATGATGGAACGCAGCTGGCAGGCTGAAGCACGAATGGCATTGCAATTACCGGCAGAAAATTTTG
CCTGTTTCAATCTTTGCGTACCCCCGTCAGCCTGCCCCCATTGCCAGCATAAAATTCGCTGGTGGCAAAATATACCATTG
ATAAGTTATCTTCTCTTACATGGTCGTTGTGCTGCTTGTGCAAAACCGATTAGCCCTCGCTATTTCTGTGTCGAACTGCT
TACCGGACTAGCGTTTGCCGCAGTAATATGGCGCTATGATGTAACACCAGTTGCCGCCGGTGGTCTGGTTTTGACAGCTG
CGTTGATAACATTAACATTTATCGATGCTGATACTCAGCTCTTGCCAGATCAGATTACTTTGCCATTACTGTGGCTGGGA
TTACTGTTTAATTGGTATAGTGAATTTGTATCCTTATCTGCAGCTATATGGGGAGCAGTAGCAGGCTATATGAGCTTGTG
GTCACTGTTTTGGCTATTCAAGCTCATAACCGGAAAAGATGGCATGGGTTATGGTGATTTTAAACTGCTGGCTGCTCTAG
GCGCATGGATGGGTGCTGCTGCATTGCCATTAATTGTATTTATAGCTGCTATTGTTGGCATCATTGCCTCTTTGATACTC
AAAGTTGCCCGCAGTCAGCCAATGGCTTTTGGCCCGGCTCTAGCCATCTCCGGCTGGATTGTTTGGATGGCCAACAGCCA
AATTAGCCAGCTCATTCACTGGTGGTTGCAACTTTCTGGATTCGATGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (129-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	55.019	95.053	0.523
pilD	Acinetobacter baumannii D1279779	51.292	95.76	0.491
pilD	Acinetobacter nosocomialis M2	51.292	95.76	0.491
pilD	Vibrio cholerae strain A1552	49.097	97.88	0.481
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449