Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQM39_RS01460 Genome accession   NZ_LS483298
Coordinates   235891..236073 (+) Length   60 a.a.
NCBI ID   WP_002986147.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8225     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 230891..241073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM39_RS01435 (NCTC8225_00288) - 231531..231962 (+) 432 WP_002987513.1 DUF1617 family protein -
  DQM39_RS01440 (NCTC8225_00289) - 231965..232582 (+) 618 WP_111680757.1 DUF1366 domain-containing protein -
  DQM39_RS01445 (NCTC8225_00290) - 232592..233047 (+) 456 WP_111680758.1 phage holin family protein -
  DQM39_RS01450 (NCTC8225_00292) - 233159..234364 (+) 1206 WP_002986150.1 glucosaminidase domain-containing protein -
  DQM39_RS01455 (NCTC8225_00293) sda1 234480..235652 (-) 1173 WP_032467302.1 streptodornase Sda1 -
  DQM39_RS01460 (NCTC8225_00294) prx 235891..236073 (+) 183 WP_002986147.1 hypothetical protein Regulator
  DQM39_RS01465 (NCTC8225_00295) - 236123..236314 (-) 192 WP_002986145.1 helix-turn-helix domain-containing protein -
  DQM39_RS01470 (NCTC8225_00297) speG 236987..237691 (+) 705 WP_002986141.1 streptococcal pyrogenic exotoxin SpeG -
  DQM39_RS01475 (NCTC8225_00298) - 238147..239496 (+) 1350 WP_011888573.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6892.81 Da        Isoelectric Point: 4.0474

>NTDB_id=1015544 DQM39_RS01460 WP_002986147.1 235891..236073(+) (prx) [Streptococcus pyogenes strain NCTC8225]
MLTYDEFKQAIDDGYIVGDTVAIVRKNGQIFDYVSPGEKVRPWEVVAEEKVEEVVMELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1015544 DQM39_RS01460 WP_002986147.1 235891..236073(+) (prx) [Streptococcus pyogenes strain NCTC8225]
ATGCTAACATACGATGAGTTTAAACAAGCGATTGATGACGGCTATATCGTAGGCGACACAGTCGCAATCGTGCGCAAAAA
CGGACAGATTTTTGATTATGTGTCGCCTGGTGAGAAAGTCAGACCATGGGAGGTTGTGGCTGAGGAAAAAGTGGAAGAAG
TGGTGATGGAATTAGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

91.667

100

0.917
  prx Streptococcus pyogenes MGAS315

80

100

0.8
  prx Streptococcus pyogenes MGAS8232

76.667

100

0.767
  prx Streptococcus pyogenes MGAS315

75

100

0.75
  prx Streptococcus pyogenes MGAS315

71.667

100

0.717
  prx Streptococcus pyogenes MGAS315

87.805

68.333

0.6
  prx Streptococcus pyogenes MGAS315

80.488

68.333

0.55