Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABVR74_RS06985 Genome accession   NZ_CP159484
Coordinates   1405023..1405427 (+) Length   134 a.a.
NCBI ID   WP_257141021.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CBA3648     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1400023..1410427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR74_RS06960 (ABVR74_06960) - 1400213..1400959 (-) 747 WP_058223057.1 bifunctional metallophosphatase/5'-nucleotidase -
  ABVR74_RS06965 (ABVR74_06965) - 1401074..1402093 (-) 1020 WP_012897709.1 DUF475 domain-containing protein -
  ABVR74_RS06970 (ABVR74_06970) - 1402141..1402638 (-) 498 WP_023189340.1 VanZ family protein -
  ABVR74_RS06975 (ABVR74_06975) - 1402772..1403401 (-) 630 WP_003130660.1 YigZ family protein -
  ABVR74_RS06980 (ABVR74_06980) comFA 1403458..1404780 (+) 1323 WP_023189341.1 DEAD/DEAH box helicase Machinery gene
  ABVR74_RS06985 (ABVR74_06985) comFC 1405023..1405427 (+) 405 WP_257141021.1 ComF family protein Machinery gene
  ABVR74_RS06990 (ABVR74_06990) - 1405460..1406038 (-) 579 WP_023189343.1 nucleotidyltransferase family protein -
  ABVR74_RS06995 (ABVR74_06995) - 1406052..1406507 (-) 456 WP_003130653.1 diacylglycerol kinase -
  ABVR74_RS07000 (ABVR74_07000) ybeY 1406491..1406979 (-) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  ABVR74_RS07005 (ABVR74_07005) - 1407131..1407610 (-) 480 WP_003130650.1 NUDIX hydrolase -
  ABVR74_RS07010 (ABVR74_07010) - 1407668..1408621 (-) 954 WP_058212272.1 PhoH family protein -
  ABVR74_RS07015 (ABVR74_07015) - 1408738..1410270 (-) 1533 WP_353891570.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15691.14 Da        Isoelectric Point: 9.8798

>NTDB_id=1013831 ABVR74_RS06985 WP_257141021.1 1405023..1405427(+) (comFC) [Lactococcus lactis subsp. lactis strain CBA3648]
MKDYFSQYKFVGDYRLYQIFEPYFKSISPKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGIHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1013831 ABVR74_RS06985 WP_257141021.1 1405023..1405427(+) (comFC) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAGTAT
TTCCCCAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTATTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.164

100

0.672
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.889

100

0.418
  comFC Latilactobacillus sakei subsp. sakei 23K

39.37

94.776

0.373

Multiple sequence alignment