Detailed information NTG1013433

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JL017_RS05365
• Genome accession: NZ_LR883050
• Coordinates: 1112575..1113567 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate L1_E925
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1107575..1118567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JL017_RS05335 (ETECE925_01096)	ispD	1107636..1108346 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JL017_RS05340 (ETECE925_01097)	ispF	1108346..1108825 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JL017_RS05345 (ETECE925_01098)	truD	1108822..1109871 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
JL017_RS05350 (ETECE925_01099)	surE	1109852..1110613 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JL017_RS05355 (ETECE925_01100)	pcm	1110607..1111233 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JL017_RS05360 (ETECE925_01101)	nlpD	1111418..1112512 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JL017_RS05365 (ETECE925_01102)	rpoS	1112575..1113567 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JL017_RS05370 (ETECE925_01103)	ygbN	1113661..1115023 (-)	1363	Protein_1072	GntP family transporter	-
JL017_RS05375 (ETECE925_01105)	ygbM	1115112..1115888 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JL017_RS05380 (ETECE925_01106)	ygbL	1115893..1116531 (-)	639	WP_001394687.1	aldolase	-
JL017_RS05385 (ETECE925_01107)	otnK	1116528..1117790 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1013433 JL017_RS05365 WP_000081550.1 1112575..1113567(+) (rpoS) [Escherichia coli isolate L1_E925]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1013433 JL017_RS05365 WP_000081550.1 1112575..1113567(+) (rpoS) [Escherichia coli isolate L1_E925]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715