Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABVJ71_RS13705 Genome accession   NZ_CP159358
Coordinates   2671549..2672145 (-) Length   198 a.a.
NCBI ID   WP_353854510.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2666549..2677145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS13685 - 2666770..2667747 (-) 978 WP_353854508.1 D-glycerate dehydrogenase -
  ABVJ71_RS13690 - 2668308..2668889 (+) 582 WP_353856677.1 carbonic anhydrase -
  ABVJ71_RS13695 - 2668927..2670549 (+) 1623 WP_353854509.1 SulP family inorganic anion transporter -
  ABVJ71_RS13700 - 2670913..2671491 (+) 579 WP_353856678.1 TIGR00730 family Rossman fold protein -
  ABVJ71_RS13705 clpP 2671549..2672145 (-) 597 WP_353854510.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ABVJ71_RS13715 - 2672766..2673932 (+) 1167 WP_353854511.1 macrolide family glycosyltransferase -
  ABVJ71_RS13720 - 2674019..2674192 (+) 174 WP_353854512.1 hypothetical protein -
  ABVJ71_RS13725 - 2674260..2674409 (+) 150 WP_353854513.1 ATP-binding cassette domain-containing protein -
  ABVJ71_RS13730 - 2674635..2674775 (+) 141 WP_353854514.1 hypothetical protein -
  ABVJ71_RS13735 - 2674824..2676233 (-) 1410 WP_353854515.1 polysaccharide deacetylase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21832.00 Da        Isoelectric Point: 4.6835

>NTDB_id=1013399 ABVJ71_RS13705 WP_353854510.1 2671549..2672145(-) (clpP) [Bacillus sp. Bos-x628]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAQEALEYGLIDKVLTRNTDEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1013399 ABVJ71_RS13705 WP_353854510.1 2671549..2672145(-) (clpP) [Bacillus sp. Bos-x628]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATTATGCTTGGTTCTGCGATTGATGACAATGTTGCCAACTCCATCGTGTCACAGCTTCTTTTCTTAGAAGCAG
AAGATCCAGAAAAGGATATTTCTATTTACATTAACAGCCCTGGTGGTTCAATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGGATGGCTGCATCAATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGCTATGCCCTTCCAAACAGTGAAGTGATGATTCACCAACCACTAGGCGGAGCTCAAGGTCAAGCAA
CGGAAATTGAGATTGCGGCCAAACGAATTCTTTCTTTACGTGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAA
CCAATCGAAGTGATCGAGCGCGATACAGATCGTGACAACTTCAAAACAGCACAAGAAGCACTTGAATACGGACTCATCGA
CAAAGTCTTGACCCGTAATACAGATGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.893

99.495

0.924
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.586

96.465

0.662
  clpP Streptococcus thermophilus LMG 18311

59.585

97.475

0.581
  clpP Streptococcus thermophilus LMD-9

59.585

97.475

0.581
  clpP Streptococcus pneumoniae TIGR4

56.701

97.98

0.556
  clpP Streptococcus pneumoniae D39

56.701

97.98

0.556
  clpP Lactococcus lactis subsp. cremoris KW2

56.701

97.98

0.556
  clpP Streptococcus pneumoniae Rx1

56.701

97.98

0.556
  clpP Streptococcus pneumoniae R6

56.701

97.98

0.556
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.639

97.98

0.535
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Streptococcus pyogenes JRS4

54.922

97.475

0.535
  clpP Streptococcus pyogenes MGAS315

54.922

97.475

0.535

Multiple sequence alignment