Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABVN21_RS21550 Genome accession   NZ_CP159258
Coordinates   4793866..4795929 (-) Length   687 a.a.
NCBI ID   WP_339555120.1    Uniprot ID   A0AAU8E0W4
Organism   Pseudomonas sp. MYb327     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4788866..4800929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN21_RS21535 (ABVN21_21535) - 4790491..4792080 (-) 1590 WP_339555122.1 AAA family ATPase -
  ABVN21_RS21540 (ABVN21_21540) aroB 4792091..4793191 (-) 1101 WP_339555121.1 3-dehydroquinate synthase -
  ABVN21_RS21545 (ABVN21_21545) aroK 4793343..4793861 (-) 519 WP_223503377.1 shikimate kinase AroK -
  ABVN21_RS21550 (ABVN21_21550) pilQ 4793866..4795929 (-) 2064 WP_339555120.1 type IV pilus secretin PilQ Machinery gene
  ABVN21_RS21555 (ABVN21_21555) - 4795943..4796470 (-) 528 WP_339555119.1 pilus assembly protein PilP -
  ABVN21_RS21560 (ABVN21_21560) pilO 4796467..4797090 (-) 624 WP_339555118.1 type 4a pilus biogenesis protein PilO -
  ABVN21_RS21565 (ABVN21_21565) - 4797087..4797653 (-) 567 WP_339555117.1 PilN domain-containing protein -
  ABVN21_RS21570 (ABVN21_21570) comM 4797653..4798714 (-) 1062 WP_339555116.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 687 a.a.        Molecular weight: 74548.52 Da        Isoelectric Point: 5.0410

>NTDB_id=1012937 ABVN21_RS21550 WP_339555120.1 4793866..4795929(-) (pilQ) [Pseudomonas sp. MYb327]
MNRTFLTLGVSLWIALLSPMVQAANLKTLDVSALPGDRVELKLAFDEPPPPPNGYTTESPARIALDLPGVVSQLANKSRD
LGSGNARSATVVEAKDRTRLIINLTQLTPYDTRVEGNNLFVVVGQAAESPVSSPAAVPAPARARAPSTKAIRGVDFQRGT
QGEGNVVIDLSDPSIAPDIQERDGKIIVAFARTQLPEPLRVRLDVKDFATPVQFVNASATGDRATISIEPSGTFDYSTYQ
TDNKLTVSVRPMTVDDLHKRNADRYAYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPWDQALD
LVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTSAEAKVDERGSI
TVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSVQNKGNWNTSGVSNGANASST
IGTPGSTSTNSPFVDLGAVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQEASS
SGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKV
VDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2064 bp        

>NTDB_id=1012937 ABVN21_RS21550 WP_339555120.1 4793866..4795929(-) (pilQ) [Pseudomonas sp. MYb327]
ATGAACAGGACTTTCTTAACCCTCGGAGTGTCGCTATGGATAGCGCTGCTGTCGCCGATGGTACAAGCGGCCAACCTCAA
GACGCTGGATGTCTCGGCGTTACCGGGAGACCGCGTCGAGTTGAAGTTGGCGTTCGATGAGCCACCGCCACCCCCCAACG
GTTACACCACGGAATCGCCGGCACGCATCGCGCTGGACTTGCCCGGTGTCGTCAGTCAACTGGCGAACAAGAGTCGCGAC
CTCGGGAGCGGTAATGCCCGCAGCGCGACGGTGGTTGAGGCCAAGGACCGCACCCGGTTGATCATCAACCTGACTCAATT
GACCCCGTATGACACGCGGGTCGAAGGCAATAACCTGTTCGTGGTGGTCGGGCAGGCAGCCGAAAGCCCGGTATCCAGTC
CGGCTGCAGTGCCAGCCCCGGCGCGTGCGCGTGCACCCTCGACCAAGGCCATTCGCGGCGTGGATTTCCAGCGCGGCACC
CAGGGTGAAGGCAATGTGGTGATCGATCTGTCGGATCCGTCAATCGCACCGGACATTCAAGAGCGCGACGGCAAGATCAT
TGTCGCCTTTGCCAGGACCCAGTTGCCGGAGCCGCTTCGCGTGCGCCTGGACGTCAAGGATTTCGCCACGCCAGTGCAAT
TCGTCAATGCCAGCGCCACGGGCGACCGGGCCACGATCAGTATCGAACCAAGTGGCACCTTCGATTATTCGACCTACCAG
ACCGATAACAAACTGACCGTCAGCGTCCGTCCGATGACCGTCGACGACCTGCACAAGCGCAATGCCGATCGCTACGCCTA
TAGCGGCGAAAAGCTCTCGTTGAACTTCCAAGACATCGATGTGCGCTCAGTGCTGCAATTGATCGCCGATTTCACCAACC
TCAATCTGGTGGCCAGCGACACGGTGCAGGGCGGCATCACCCTGCGCTTGCAGAATGTTCCGTGGGACCAAGCGCTGGAC
CTGGTGCTGAAAACCAAGGGGCTGGACAAGCGTAAAGTCGGTAACGTCTTGCTGGTGGCGCCCGCCGATGAAATTGCCGC
CCGCGAACGGCAGGAGCTGGAATCGCAGAAGCAGATCGCCGATCTGGCGCCACTACGACGGGAGTTGTTGCAGGTCAACT
ACGCCAAGGCCGCTGACATCGCCAAGCTGTTCCAGTCAGTGACCAGCGCAGAGGCTAAAGTCGACGAACGGGGCTCGATC
ACCGTCGATGAGCGCACCAACAATATCATTGCCTACCAGACTCAAGACCGGCTGGACGAGTTGCGGCGAATCGTTGCACA
ACTGGATATTCCGGTGCGTCAGGTGATGATCGAGGCGCGCATCGTCGAAGCGAACGTCGACTATGACAAAAGCCTCGGTG
TGCGCTGGGGTGGTTCCGTGCAGAACAAGGGCAACTGGAACACTTCCGGTGTCAGCAATGGCGCCAACGCGTCCTCAACC
ATTGGCACACCGGGAAGCACCAGTACCAACTCGCCGTTCGTCGACTTGGGGGCTGTGAACAACACCTCCGGAATCGGCAT
CGCGTTCATCACCGATAACGTCCTGTTGGACCTGGAACTGACGGCGATGGAGAAAACCGGCAACGGCGAAATCGTCTCCC
AGCCCAAGGTCGTCACGTCCGACAAGGAAACCGCGAAAATCCTCAAGGGCACCGAGATTCCGTATCAGGAAGCCAGCTCC
AGCGGCGCTACGTCGGTGTCATTCAAGGAGGCCTCGCTGTCGCTGGAAGTGACGCCGCAGATCACCCCGGACAACCGGAT
CATCATGGAGGTGAAGGTCACCAAGGACGAGCCGGATTACCTGAACAAGGTCCAGGATGTGCCGCCGATCAAGAAAAACG
AAGTCAATGCCAAGGTCCTGGTCAACGATGGCGAGACCATCGTCATTGGCGGCGTTTTCTCAAATACTCAAAGCAAGGTT
GTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGACGTGGTTTCGGAGAAAAAATC
CGAGCTGTTGGTGTTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(369-434)

Bacterial type II and III secretion system protein (Secretin)

(522-678)

Secretin and TonB N terminus short domain (STN)

(295-341)

AMIN domain (AMIN)

(37-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.147

100

0.761
  comQ Acinetobacter baylyi ADP1

41.871

100

0.424
  pilQ Acinetobacter baumannii D1279779

38.42

100

0.41
  pilQ Acinetobacter baumannii strain A118

38.42

100

0.41
  pilQ Legionella pneumophila strain ERS1305867

38.209

97.525

0.373
  pilQ Legionella pneumophila strain Lp02

38.209

97.525

0.373

Multiple sequence alignment