Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABVN21_RS21570 Genome accession   NZ_CP159258
Coordinates   4797653..4798714 (-) Length   353 a.a.
NCBI ID   WP_339555116.1    Uniprot ID   A0AAU8DZQ4
Organism   Pseudomonas sp. MYb327     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4792653..4803714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN21_RS21545 (ABVN21_21545) aroK 4793343..4793861 (-) 519 WP_223503377.1 shikimate kinase AroK -
  ABVN21_RS21550 (ABVN21_21550) pilQ 4793866..4795929 (-) 2064 WP_339555120.1 type IV pilus secretin PilQ Machinery gene
  ABVN21_RS21555 (ABVN21_21555) - 4795943..4796470 (-) 528 WP_339555119.1 pilus assembly protein PilP -
  ABVN21_RS21560 (ABVN21_21560) pilO 4796467..4797090 (-) 624 WP_339555118.1 type 4a pilus biogenesis protein PilO -
  ABVN21_RS21565 (ABVN21_21565) - 4797087..4797653 (-) 567 WP_339555117.1 PilN domain-containing protein -
  ABVN21_RS21570 (ABVN21_21570) comM 4797653..4798714 (-) 1062 WP_339555116.1 pilus assembly protein PilM Machinery gene
  ABVN21_RS21575 (ABVN21_21575) - 4798927..4801368 (+) 2442 WP_339555115.1 penicillin-binding protein 1A -
  ABVN21_RS21580 (ABVN21_21580) - 4801572..4802840 (-) 1269 WP_339555114.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38070.51 Da        Isoelectric Point: 4.8960

>NTDB_id=1012938 ABVN21_RS21570 WP_339555116.1 4797653..4798714(-) (comM) [Pseudomonas sp. MYb327]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGNGYRVEAYAVEPLPANAVIEKNIAELEGVGQALSRVLLKARTSLKNAAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGASARNPERVNVLLAACRKENVEVREAALTL
AGLTARVVDVEAYALERSFGLLANQLASSREHLVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTIE
QAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYHSVDHILLAGGTASISGLDRLIEQKLGTPTQVANPF
ADMTLSNKVNAAVLTSDAPAMIIACGLALRSFD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1012938 ABVN21_RS21570 WP_339555116.1 4797653..4798714(-) (comM) [Pseudomonas sp. MYb327]
GTGCTAGGACTCTTCAACAAAAAGGCCAATACGCTTTTAGGGATCGACATCAGCTCCACGTCGGTGAAACTTCTGGAGCT
GAGCCGTCAGGGCAACGGTTATCGGGTCGAGGCCTACGCAGTTGAGCCGCTGCCCGCCAACGCTGTAATCGAAAAGAATA
TCGCCGAGCTCGAAGGTGTGGGCCAGGCCCTTTCGCGTGTGCTGCTCAAGGCTAGAACCAGCCTCAAAAACGCTGCCGTG
GCGGTGGCCGGTTCAGCGGTCATCACCAAGACCATCGAAATGGATGCCGGACTTTCCGACGACGAGATGGAAAACCAGCT
GAAGATCGAGGCTGATCAGTACATCCCCTATCCGTTGGATGAAGTCGCGATTGACTTTGAAGTGCAGGGCGCTTCAGCGC
GCAACCCTGAGCGGGTCAATGTGCTACTCGCAGCGTGTCGCAAAGAAAACGTTGAAGTCCGTGAAGCGGCGCTGACCCTG
GCCGGCCTGACCGCGCGCGTGGTCGATGTCGAGGCCTATGCGCTGGAGCGATCCTTCGGCTTGCTGGCTAATCAACTGGC
GAGCTCCAGGGAACATCTGGTCGCGGTGGTCGATATCGGCGCGACCATGACCACCCTCAGCGTGCTGCACAACGGACGGA
TCATTTATACCCGCGAGCAGTTGTTCGGCGGGCGTCAACTGACGGAAGAGATCCAGCGTCGATATGGCCTGACGATCGAG
CAGGCGGGTCTGGCAAAGAAGCAGGGCGGATTGCCGGACGATTATGTCAGTGAAGTGTTGCAGCCGTTTCGCGAGGCATT
GGTGCAGCAGGTGTCGCGTTCGTTGCAGTTTTTCTTCGCATCTGGCCAATACCACTCGGTCGATCACATTTTGCTGGCTG
GCGGGACTGCGTCAATCTCCGGACTGGATCGATTGATTGAACAGAAGCTCGGCACTCCGACCCAGGTGGCCAATCCGTTT
GCCGACATGACCCTCAGTAACAAGGTCAACGCCGCGGTGCTGACCAGCGATGCGCCAGCGATGATAATCGCCTGCGGGCT
GGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.374

100

0.564
  pilM Acinetobacter baumannii D1279779

56.091

100

0.561
  comM Acinetobacter baylyi ADP1

54.958

100

0.55
  pilM Legionella pneumophila strain ERS1305867

47.74

100

0.479

Multiple sequence alignment