Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LJDFIFNA_RS06875 Genome accession   NZ_LR822060
Coordinates   1324952..1325539 (-) Length   195 a.a.
NCBI ID   WP_001049165.1    Uniprot ID   A0A0D1I3W4
Organism   Staphylococcus aureus isolate P3.1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1319952..1330539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJDFIFNA_RS06860 (BKMNNEJI_01315) - 1320761..1321774 (-) 1014 WP_000654030.1 sugar-binding transcriptional regulator -
  LJDFIFNA_RS06865 (BKMNNEJI_01316) - 1322475..1323104 (-) 630 WP_000070831.1 DUF4887 domain-containing protein -
  LJDFIFNA_RS06870 (BKMNNEJI_01317) - 1323807..1324709 (+) 903 WP_000816304.1 TIGR01777 family oxidoreductase -
  LJDFIFNA_RS06875 (BKMNNEJI_01318) clpP 1324952..1325539 (-) 588 WP_001049165.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  LJDFIFNA_RS06880 (BKMNNEJI_01320) whiA 1326103..1327047 (-) 945 WP_000006551.1 DNA-binding protein WhiA -
  LJDFIFNA_RS06885 (BKMNNEJI_01321) - 1327158..1328153 (-) 996 WP_001248939.1 YvcK family protein -
  LJDFIFNA_RS06890 (BKMNNEJI_01322) rapZ 1328150..1329061 (-) 912 WP_000369720.1 RNase adapter RapZ -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21513.57 Da        Isoelectric Point: 4.8965

>NTDB_id=1011979 LJDFIFNA_RS06875 WP_001049165.1 1324952..1325539(-) (clpP) [Staphylococcus aureus isolate P3.1]
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDT
IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQ
SIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1011979 LJDFIFNA_RS06875 WP_001049165.1 1324952..1325539(-) (clpP) [Staphylococcus aureus isolate P3.1]
ATGAATTTAATTCCTACAGTTATTGAAACAACAAACCGCGGTGAACGTGCATATGATATATACTCACGTTTATTAAAAGA
CCGTATTATTATGTTAGGTTCACAAATTGATGACAACGTAGCAAATTCAATCGTATCACAGTTATTATTCTTACAAGCGC
AAGACTCAGAGAAAGATATTTATTTATACATTAATTCACCAGGTGGAAGTGTAACAGCTGGTTTTGCGATTTATGATACA
ATTCAACACATTAAACCTGATGTTCAAACAATTTGTATCGGTATGGCTGCATCAATGGGATCATTCTTATTAGCAGCTGG
TGCAAAAGGTAAACGTTTCGCGTTACCAAATGCAGAAGTAATGATTCACCAACCATTAGGTGGTGCTCAAGGACAAGCAA
CTGAAATCGAAATTGCTGCAAATCACATTTTAAAAACACGTGAAAAATTAAACCGCATTTTATCAGAGCGTACTGGTCAA
AGTATTGAAAAAATACAAAAAGACACAGATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGA
TGAAGTGATGGTACCTGAAACAAAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 9JOP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

81.053

97.436

0.79
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

96.41

0.656
  clpP Streptococcus pneumoniae Rx1

63.684

97.436

0.621
  clpP Streptococcus pneumoniae D39

63.684

97.436

0.621
  clpP Streptococcus pneumoniae R6

63.684

97.436

0.621
  clpP Streptococcus pneumoniae TIGR4

63.684

97.436

0.621
  clpP Streptococcus thermophilus LMG 18311

63.158

97.436

0.615
  clpP Streptococcus thermophilus LMD-9

63.158

97.436

0.615
  clpP Lactococcus lactis subsp. cremoris KW2

62.105

97.436

0.605
  clpP Streptococcus mutans UA159

61.257

97.949

0.6
  clpP Streptococcus pyogenes JRS4

61.053

97.436

0.595
  clpP Streptococcus pyogenes MGAS315

61.053

97.436

0.595
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

60

97.436

0.585