Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   H1X38_RS09965 Genome accession   NZ_LR822035
Coordinates   918568..918786 (-) Length   72 a.a.
NCBI ID   WP_011681105.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1051     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 913568..923786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X38_RS04845 (STHERMO_1047) cas1 913730..914734 (-) 1005 WP_014727507.1 CRISPR-associated endonuclease Cas1 -
  H1X38_RS04850 (STHERMO_1048) - 914873..915820 (-) 948 WP_014608279.1 dihydroorotate dehydrogenase -
  H1X38_RS04855 (STHERMO_1049) - 915839..916612 (-) 774 WP_011681108.1 dihydroorotate dehydrogenase electron transfer subunit -
  H1X38_RS04860 (STHERMO_1050) - 916883..917431 (-) 549 WP_014608278.1 DJ-1 family glyoxalase III -
  H1X38_RS10490 - 917473..917697 (-) 225 WP_011227180.1 TraX family protein -
  H1X38_RS04870 (STHERMO_1051) - 917698..918366 (-) 669 WP_014621543.1 TraX family protein -
  H1X38_RS09965 (STHERMO_1052) prx 918568..918786 (-) 219 WP_011681105.1 hypothetical protein Regulator
  H1X38_RS04875 (STHERMO_1053) - 919223..919414 (-) 192 WP_011681104.1 hypothetical protein -
  H1X38_RS04880 (STHERMO_1054) - 919418..919903 (-) 486 WP_014607832.1 NUDIX hydrolase -
  H1X38_RS04885 (STHERMO_1055) - 920209..921189 (-) 981 WP_011681102.1 DUF6994 family protein -
  H1X38_RS04890 (STHERMO_1057) - 921488..923146 (+) 1659 WP_014608275.1 NFACT family protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8147.18 Da        Isoelectric Point: 4.4665

>NTDB_id=1011206 H1X38_RS09965 WP_011681105.1 918568..918786(-) (prx) [Streptococcus thermophilus isolate STH_CIRM_1051]
MNSIGKENNIILTYDEFKEAMDNGFIKGDTVQIVRKNGKIHDYVLDGERVEPHEILSLEKVSDIIKELGGDN

Nucleotide


Download         Length: 219 bp        

>NTDB_id=1011206 H1X38_RS09965 WP_011681105.1 918568..918786(-) (prx) [Streptococcus thermophilus isolate STH_CIRM_1051]
ATGAATAGCATAGGAAAGGAGAATAATATAATACTAACCTATGATGAATTTAAAGAGGCTATGGACAACGGTTTTATTAA
AGGTGATACTGTCCAGATTGTCCGAAAGAATGGTAAGATCCATGACTACGTTTTAGACGGTGAACGAGTTGAGCCACACG
AAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAAGAACTAGGCGGAGACAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

58.621

80.556

0.472
  prx Streptococcus pyogenes MGAS8232

57.627

81.944

0.472
  prx Streptococcus pyogenes MGAS315

55.932

81.944

0.458
  prx Streptococcus pyogenes MGAS315

55.172

80.556

0.444
  prx Streptococcus pyogenes MGAS315

73.81

58.333

0.431
  prx Streptococcus pyogenes MGAS315

65.909

61.111

0.403
  prx Streptococcus pyogenes MGAS315

68.293

56.944

0.389