Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   H1X38_RS03875 Genome accession   NZ_LR822035
Coordinates   736366..736527 (-) Length   53 a.a.
NCBI ID   WP_014727422.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1051     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 731366..741527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X38_RS03865 (STHERMO_0817) - 731415..734051 (-) 2637 WP_014727421.1 calcium-translocating P-type ATPase, PMCA-type -
  H1X38_RS03870 (STHERMO_0818) pabB 734228..735946 (-) 1719 WP_014608193.1 aminodeoxychorismate synthase component I -
  H1X38_RS03875 (STHERMO_0819) prx 736366..736527 (-) 162 WP_014727422.1 hypothetical protein Regulator
  H1X38_RS03880 (STHERMO_0821) - 737011..737286 (-) 276 WP_014727423.1 hypothetical protein -
  H1X38_RS03885 (STHERMO_0822) - 737303..737485 (-) 183 WP_014727424.1 hypothetical protein -
  H1X38_RS03890 (STHERMO_0823) - 737814..738887 (-) 1074 WP_014727425.1 VapE domain-containing protein -
  H1X38_RS03895 (STHERMO_0824) - 739223..740080 (-) 858 WP_014727426.1 primase alpha helix C-terminal domain-containing protein -
  H1X38_RS03900 (STHERMO_0825) - 740095..740367 (-) 273 WP_011227098.1 MerR family transcriptional regulator -
  H1X38_RS03905 (STHERMO_0826) - 740369..740710 (-) 342 WP_224102964.1 hypothetical protein -
  H1X38_RS03910 (STHERMO_0827) - 740697..740933 (-) 237 WP_014727428.1 hypothetical protein -
  H1X38_RS03915 (STHERMO_0828) - 740947..741141 (-) 195 WP_014727429.1 hypothetical protein -
  H1X38_RS03920 (STHERMO_0829) - 741145..741450 (-) 306 WP_014727430.1 hypothetical protein -

Sequence

Protein


Download         Length: 53 a.a.        Molecular weight: 6084.95 Da        Isoelectric Point: 4.2412

>NTDB_id=1011144 H1X38_RS03875 WP_014727422.1 736366..736527(-) (prx) [Streptococcus thermophilus isolate STH_CIRM_1051]
MLTYDEFKEAMDKGFIKGDTVQIVRLDGEQVEPREILSLEKVSDIIKELGKDN

Nucleotide


Download         Length: 162 bp        

>NTDB_id=1011144 H1X38_RS03875 WP_014727422.1 736366..736527(-) (prx) [Streptococcus thermophilus isolate STH_CIRM_1051]
ATGCTGACTTATGATGAATTTAAAGAGGCAATGGACAAGGGTTTTATTAAAGGTGATACTGTCCAGATTGTCCGATTAGA
CGGTGAACAAGTTGAGCCACGCGAAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAGGAACTAGGCAAGGACAACT
AA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

48.333

100

0.547
  prx Streptococcus pyogenes MGAS315

46.667

100

0.528
  prx Streptococcus pyogenes MGAS315

46.667

100

0.528
  prx Streptococcus pyogenes MGAS315

45

100

0.509
  prx Streptococcus pyogenes MGAS315

56.818

83.019

0.472
  prx Streptococcus pyogenes MGAS315

57.143

79.245

0.453
  prx Streptococcus pyogenes MGAS315

60.526

71.698

0.434