Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ABJ384_RS01590 Genome accession   NZ_CP157981
Coordinates   338044..338967 (+) Length   307 a.a.
NCBI ID   WP_349928513.1    Uniprot ID   A0AAU7SYI2
Organism   Acinetobacter sp. A1-4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333044..343967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS01565 (ABJ384_01565) rpoZ 334827..335108 (-) 282 WP_004896248.1 DNA-directed RNA polymerase subunit omega -
  ABJ384_RS01570 (ABJ384_01570) gmk 335185..335808 (-) 624 WP_349928505.1 guanylate kinase -
  ABJ384_RS01575 (ABJ384_01575) ispH 335943..336893 (+) 951 WP_349928507.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABJ384_RS01580 (ABJ384_01580) - 337056..337538 (+) 483 WP_349928509.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABJ384_RS01585 (ABJ384_01585) pilV 337538..338044 (+) 507 WP_349928511.1 type IV pilus modification protein PilV Machinery gene
  ABJ384_RS01590 (ABJ384_01590) pilW 338044..338967 (+) 924 WP_349928513.1 PilW family protein Machinery gene
  ABJ384_RS01595 (ABJ384_01595) - 338964..339770 (+) 807 WP_349928514.1 hypothetical protein -
  ABJ384_RS01600 (ABJ384_01600) pilY1 339787..343647 (+) 3861 WP_349928516.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 33342.88 Da        Isoelectric Point: 5.7616

>NTDB_id=1009463 ABJ384_RS01590 WP_349928513.1 338044..338967(+) (pilW) [Acinetobacter sp. A1-4-2]
MNNKFPATGLHQLGFTLVELIIALALGLLITAAATQLFLGGIVSARIQQANAELQDSGVFGLDYMARDIRLANYGNINNP
ELTNTTQLGGIVLSQGASGSVNVPKDIGDSSVTLQGLTSNVSEKSDQLTIQFSAPNDMFNCEGEEVKTGEYVIQRYFLRK
DNNGEEKDLVLACDANKKGAMSVTNITDFGGTQLGQVIMPRVDHLRFYLGTMTKNDSDVISTTYYTINEYITVANAARNA
GQLVPRITSIKAAVIVRSVDNTNNQLVDPTKPIQFLDKSVTLTNQTKHLRRVYMTTIAIRNGMGDAI

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1009463 ABJ384_RS01590 WP_349928513.1 338044..338967(+) (pilW) [Acinetobacter sp. A1-4-2]
ATGAATAATAAGTTTCCGGCTACTGGTCTTCATCAATTAGGTTTTACCTTAGTTGAATTAATTATAGCACTCGCTTTAGG
TTTATTAATTACGGCTGCTGCGACGCAACTTTTCTTGGGGGGAATTGTATCTGCTCGTATCCAGCAAGCTAATGCGGAGC
TTCAAGATAGCGGTGTATTTGGACTAGATTATATGGCTCGAGATATCCGTTTAGCCAATTATGGCAATATTAATAATCCT
GAATTGACTAATACTACCCAGTTGGGGGGGATTGTACTTTCTCAGGGAGCTTCTGGTTCTGTAAATGTACCTAAAGATAT
AGGAGATAGTTCTGTCACCCTTCAAGGATTAACATCGAATGTTTCTGAAAAAAGTGATCAGCTTACAATCCAGTTTTCTG
CGCCAAATGACATGTTCAATTGTGAAGGAGAAGAAGTAAAAACTGGGGAATATGTGATTCAGCGTTATTTCTTGAGAAAA
GATAATAATGGGGAAGAAAAAGATTTAGTACTTGCATGTGATGCCAACAAAAAAGGGGCAATGTCTGTTACAAATATCAC
TGATTTTGGGGGAACCCAACTAGGCCAAGTTATTATGCCAAGGGTCGATCATCTGAGATTCTACCTAGGCACTATGACTA
AAAATGATTCTGATGTTATATCAACTACATATTATACTATAAATGAGTATATTACTGTCGCAAATGCGGCTCGTAATGCG
GGTCAGCTTGTTCCAAGAATTACTTCTATAAAAGCAGCAGTCATCGTAAGGTCAGTAGATAACACAAATAACCAACTCGT
TGATCCAACCAAACCTATTCAGTTTTTAGATAAATCGGTGACGCTTACTAATCAGACGAAACATTTAAGAAGAGTGTATA
TGACGACTATAGCAATACGTAATGGTATGGGGGATGCAATATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)

Type IV Pilus-assembly protein W (PilW)

(155-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

48.93

100

0.521

Multiple sequence alignment