Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ABKA15_RS07240 Genome accession   NZ_CP157941
Coordinates   1476170..1476835 (-) Length   221 a.a.
NCBI ID   WP_106387856.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_010     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1471170..1481835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS07210 (ABKA15_07205) rlmN 1471466..1472548 (-) 1083 WP_350015333.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ABKA15_RS07215 (ABKA15_07210) - 1472587..1473150 (-) 564 WP_049512409.1 YutD-like domain-containing protein -
  ABKA15_RS07220 (ABKA15_07215) sepM 1473290..1474345 (-) 1056 WP_049512407.1 SepM family pheromone-processing serine protease Regulator
  ABKA15_RS07225 (ABKA15_07220) coaD 1474326..1474823 (-) 498 WP_049512405.1 pantetheine-phosphate adenylyltransferase -
  ABKA15_RS07230 (ABKA15_07225) rsmD 1474813..1475361 (-) 549 WP_185952239.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABKA15_RS07235 (ABKA15_07230) raiA 1475550..1476092 (-) 543 WP_106387855.1 ribosome-associated translation inhibitor RaiA -
  ABKA15_RS07240 (ABKA15_07235) comFC/cflB 1476170..1476835 (-) 666 WP_106387856.1 ComF family protein Machinery gene
  ABKA15_RS07245 (ABKA15_07240) comFA/cflA 1476832..1478133 (-) 1302 WP_106387857.1 DEAD/DEAH box helicase Machinery gene
  ABKA15_RS07250 (ABKA15_07245) - 1478190..1478825 (+) 636 WP_106387858.1 YigZ family protein -
  ABKA15_RS07255 (ABKA15_07250) cysK 1478924..1479853 (+) 930 WP_106387859.1 cysteine synthase A -
  ABKA15_RS07260 (ABKA15_07255) - 1480444..1481295 (-) 852 WP_059221073.1 DNA adenine methylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25445.47 Da        Isoelectric Point: 7.3987

>NTDB_id=1009130 ABKA15_RS07240 WP_106387856.1 1476170..1476835(-) (comFC/cflB) [Streptococcus sp. KHUD_010]
MNNCLLCESLLDEKLTFCDLLTLTKPKARACDTCFEKFQRISGQHCPKCYRDGASEVCMDCQVWIEKGKEVCHKSCFVYN
EAMKDFFSQYKFQGDYALYSVFAEVLQKELKVYRDYTLVPIPVSSEKYQKRGFNQVTALLEGAQLPFKEVLEKHDTIAQS
SKTREERLQSRQCFKLKDNVQLPPKILLIDDIYTTGSTLQLAKEILVEAGVKEIVTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1009130 ABKA15_RS07240 WP_106387856.1 1476170..1476835(-) (comFC/cflB) [Streptococcus sp. KHUD_010]
ATGAATAACTGTCTGTTATGTGAAAGTCTACTTGATGAAAAGCTAACATTTTGTGATTTGCTGACTTTGACGAAGCCAAA
AGCAAGAGCCTGTGATACCTGTTTTGAAAAATTTCAACGCATTTCAGGGCAGCATTGCCCAAAGTGTTATCGTGACGGGG
CAAGTGAAGTCTGCATGGATTGCCAAGTGTGGATAGAAAAAGGAAAAGAAGTTTGCCATAAAAGCTGTTTTGTGTATAAT
GAAGCCATGAAAGACTTCTTCAGTCAATATAAATTTCAAGGGGATTATGCCCTTTATTCTGTATTTGCTGAAGTTTTGCA
AAAGGAATTAAAAGTTTACCGTGATTATACGCTTGTTCCTATTCCTGTAAGTAGTGAAAAGTACCAGAAGCGAGGCTTCA
ACCAAGTAACAGCTCTTCTTGAGGGCGCACAGTTGCCATTTAAGGAAGTTTTAGAAAAGCATGATACAATTGCTCAATCC
AGTAAAACAAGAGAGGAGCGATTGCAAAGCCGGCAGTGTTTTAAATTGAAAGACAATGTTCAACTTCCACCCAAAATCCT
TTTGATAGATGACATTTATACAACAGGCTCAACCCTACAATTGGCCAAGGAAATTTTAGTGGAAGCGGGAGTGAAAGAAA
TTGTGACATTTTCATTAGCCAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae D39

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae R6

48.165

98.643

0.475
  comFC Bacillus subtilis subsp. subtilis str. 168

37.004

100

0.38

Multiple sequence alignment