Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   ABKA15_RS03270 Genome accession   NZ_CP157941
Coordinates   664706..665407 (+) Length   233 a.a.
NCBI ID   WP_049513494.1    Uniprot ID   A0AAU7Q090
Organism   Streptococcus sp. KHUD_010     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 659706..670407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS03250 (ABKA15_03245) ccpA 660405..661409 (+) 1005 WP_049514346.1 catabolite control protein A Regulator
  ABKA15_RS03255 (ABKA15_03250) - 661741..662739 (+) 999 WP_106388373.1 glycosyltransferase -
  ABKA15_RS03260 (ABKA15_03255) - 662741..664054 (+) 1314 WP_106388374.1 glycosyltransferase family 4 protein -
  ABKA15_RS03265 (ABKA15_03260) - 664081..664422 (+) 342 WP_106388375.1 hypothetical protein -
  ABKA15_RS03270 (ABKA15_03265) micA 664706..665407 (+) 702 WP_049513494.1 response regulator YycF Regulator
  ABKA15_RS03275 (ABKA15_03270) micB 665400..666752 (+) 1353 WP_022526267.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ABKA15_RS03280 (ABKA15_03275) vicX 666754..667557 (+) 804 WP_049513492.1 MBL fold metallo-hydrolase Regulator
  ABKA15_RS03285 (ABKA15_03280) - 667566..667925 (+) 360 WP_049513490.1 DUF454 family protein -
  ABKA15_RS03290 (ABKA15_03285) rnc 668311..669009 (+) 699 WP_049513488.1 ribonuclease III -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26953.92 Da        Isoelectric Point: 4.6947

>NTDB_id=1009109 ABKA15_RS03270 WP_049513494.1 664706..665407(+) (micA) [Streptococcus sp. KHUD_010]
MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAEHPDILILDLMLPEMDGLEVARTIRKTSNVPIIVLSA
KDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDLTIENQEAEAEPKEIVIGDLQILTDAFVVKKHGEELDLTH
REFELLHHLATHIGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNND

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1009109 ABKA15_RS03270 WP_049513494.1 664706..665407(+) (micA) [Streptococcus sp. KHUD_010]
ATGAAAAAAATATTAGTTGTAGATGATGAGAAACCAATCTCAGATATTATAAAGTTTAACATGGTAAAAGAAGGTTATGA
AGTAGTGACAGCCTTCGACGGTCGCGAAGCGTTAGAAATGTTTGAAGCAGAACATCCAGATATTTTGATTTTGGACTTGA
TGTTGCCCGAAATGGATGGTTTAGAGGTGGCGCGAACGATTCGGAAAACGAGTAATGTGCCAATCATCGTTCTTTCTGCC
AAAGACAGTGAATTTGACAAAGTTATTGGTCTTGAGATTGGTGCAGATGACTATATGACAAAGCCTTTCTCTAATCGTGA
ATTGCAGGCGCGTGTCAAAGCCATTTTGCGGCGGACAGATTTGACAATTGAAAATCAAGAAGCAGAAGCTGAACCAAAAG
AAATTGTGATTGGAGATCTGCAGATTTTGACCGATGCTTTTGTCGTGAAAAAGCATGGCGAAGAATTAGATTTAACACAC
CGTGAGTTTGAATTGCTCCACCATTTGGCAACGCATATCGGGCAAGTGATGACGCGTGAACATCTGCTAGAAACGGTGTG
GGGCTATGATTATTTTGGAGATGTGCGGACGGTCGATGTGACAATTCGTCGTTTGAGAGAAAAGATTGAGGATATTCCTA
GCCGACCAGAGTACATTTTAACACGGCGCGGCGTTGGATATTACATGAGAAACAATGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

82.833

100

0.828
  vicR Streptococcus mutans UA159

79.237

100

0.803
  covR Streptococcus salivarius strain HSISS4

44.978

98.283

0.442
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.541

98.283

0.438
  scnR Streptococcus mutans UA159

36.052

100

0.361

Multiple sequence alignment