Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ABKA15_RS02010 Genome accession   NZ_CP157941
Coordinates   408057..410036 (+) Length   659 a.a.
NCBI ID   WP_106388159.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_010     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 403057..415036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS01995 (ABKA15_01990) - 403260..404870 (+) 1611 WP_049514174.1 CTP synthase -
  ABKA15_RS02000 (ABKA15_01995) - 405033..405719 (+) 687 WP_065428430.1 phenylalanine--tRNA ligase beta subunit-related protein -
  ABKA15_RS02005 (ABKA15_02000) amiA3 405884..407860 (+) 1977 WP_049514169.1 peptide ABC transporter substrate-binding protein Regulator
  ABKA15_RS02010 (ABKA15_02005) amiA3 408057..410036 (+) 1980 WP_106388159.1 peptide ABC transporter substrate-binding protein Regulator
  ABKA15_RS02015 (ABKA15_02010) amiC 410410..411906 (+) 1497 WP_106388160.1 ABC transporter permease Regulator
  ABKA15_RS02020 (ABKA15_02015) amiD 411906..412832 (+) 927 WP_106388161.1 oligopeptide ABC transporter permease OppC Regulator
  ABKA15_RS02025 (ABKA15_02020) amiE 412841..413908 (+) 1068 WP_106388162.1 ABC transporter ATP-binding protein Regulator
  ABKA15_RS02030 (ABKA15_02025) amiF 413919..414842 (+) 924 WP_049514159.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73382.01 Da        Isoelectric Point: 7.8685

>NTDB_id=1009097 ABKA15_RS02010 WP_106388159.1 408057..410036(+) (amiA3) [Streptococcus sp. KHUD_010]
MKKSKIITLAALALLATGTLAACSGSKTSSGNKTFSYVYEQDPDNLNYLTTGKAATANLTSNVIDGLLENDRYGNLVPSM
AKDWTVSKDGLTYTYTLRKGVKWYTSEGEEYAEVKAQDFVTGLKYAADNKSDAIYLVQDSIKGLDAYMKGENKDFSSVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSLLYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDNIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYSSVSKKYKNNIVYTPQDATTYLVSTNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKSFGELVKEKLVGYDESWKDVN
LDDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGENTKTYLGFDAGTNNTAAAQVGMNEYERLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQNQYKKAMKKWN
KKRTESNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1009097 ABKA15_RS02010 WP_106388159.1 408057..410036(+) (amiA3) [Streptococcus sp. KHUD_010]
ATGAAAAAAAGTAAAATCATTACCCTTGCAGCGCTAGCCTTGCTTGCAACAGGAACTCTAGCAGCTTGTTCTGGCTCTAA
AACAAGCTCTGGGAATAAAACATTCTCATATGTTTATGAGCAAGATCCAGATAATTTGAACTATTTGACAACTGGGAAAG
CAGCTACTGCAAATCTTACCAGCAATGTTATTGACGGACTTTTGGAAAATGACCGTTATGGAAATCTAGTTCCTTCTATG
GCGAAGGATTGGACCGTCTCTAAAGATGGCTTGACTTATACTTATACACTTCGTAAGGGTGTGAAGTGGTACACATCGGA
AGGCGAAGAGTATGCAGAAGTTAAGGCACAAGACTTTGTGACAGGCTTAAAATATGCTGCGGACAATAAATCTGATGCTA
TTTACTTGGTGCAAGATTCAATCAAAGGCTTGGATGCTTACATGAAGGGTGAAAATAAAGATTTCTCTTCTGTCGGTATC
AAAGCAGTTGATGATTACACAGTTCAATACACGCTTAATCGACCAGAAAGCTTTTGGAATTCTAAAACAACAATGGGCGT
TTTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAATAAATTTGCACAAGCAACAGATCCGTCTAGTCTGCTTT
ATAATGGTCCATACTTGCTAAAATCTATCACAGCGAAATCGTCTGTTGAATTTGCTAAAAATCCAAACTACTGGGATAAG
AAAAATGTGCACATTGATAACATTAAGTTGTCCTACTATGATGGTCAAGACCAAGATAAACTTGCTAAAGGATTTAGTGA
TGGCTCATTTACCAATGCCAAAGTATTTCCAACAAGTCCAAGTTATTCATCTGTTAGCAAGAAATATAAAAACAACATCG
TTTATACTCCACAAGATGCAACGACTTACCTAGTATCTACAAATATTGATCGTCAATCTTACAATCATACTTCAAAGACA
ACAGATGCTCAAAAAACTTCTACTAAGAAAGCTTTGCTGAACAAAGACTTCCGTCAAGCCATTACCTTTGCATTTGACCG
CACAGCTTATGCGTCACAAGTAAATGGTAAAGACGGTGCGACGAAGATGCTTCGTAATCTCTTTGTACCACCAACATTTG
TTCAAACAGATGACAAGAGCTTTGGGGAATTGGTCAAAGAAAAATTAGTTGGCTACGATGAAAGTTGGAAAGATGTCAAC
TTAGATGATGCACAAGATGGGCTTTATAATCCAACTAAAGCTAAAGAAAAATTAGCGAAAGCGAAAGCAGCGCTTCAAGC
AGATGGCGTTCAATTCCCAATTCACATTGATATGCCAGTTGACCAAACAGCAACTAACAAAGTTCAACGTGTGCAATCAT
TGAAACAATCTATTGAAAAAAATCTTGGTAAAGAAAATGTTGTGATTGATATTCAACAAATGTCTAAAGACGACGTGAAT
AATATCACTTACTTTGCTGAATCTGCAGCAGCAGAAGATTGGGACCTTTCTGATAATGTTGGTTGGAGTCCAGACTTCCA
AGACCCATCTACTTATCTTGATGTCATCAAACCTTCAAGTGGTGAAAACACTAAGACTTATCTAGGATTTGATGCAGGCA
CGAATAACACTGCAGCAGCACAAGTTGGTATGAACGAATATGAAAGGCTGTTGAATGAGGCTGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCACAAGCTTGGTTGACAGATAATGCATTAGTCATTCCAACAACAACGCT
AACGGGTCGCCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATCCTATATAAATATCTTGAACTCCAAGATGAGCCTGTGACTCAAAATCAATACAAGAAAGCAATGAAAAAATGGAAT
AAAAAGCGCACAGAATCTAATAAAAAGGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.606

100

0.607
  amiA3 Streptococcus thermophilus LMG 18311

60

100

0.601
  amiA Streptococcus salivarius strain HSISS4

60

100

0.601

Multiple sequence alignment