Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ABKA15_RS02005 Genome accession   NZ_CP157941
Coordinates   405884..407860 (+) Length   658 a.a.
NCBI ID   WP_049514169.1    Uniprot ID   A0A7L8W3I0
Organism   Streptococcus sp. KHUD_010     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 400884..412860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS01985 (ABKA15_01980) tig 400959..402242 (+) 1284 WP_049514177.1 trigger factor -
  ABKA15_RS01990 (ABKA15_01985) rpoE 402482..403075 (+) 594 WP_049514176.1 DNA-directed RNA polymerase subunit delta -
  ABKA15_RS01995 (ABKA15_01990) - 403260..404870 (+) 1611 WP_049514174.1 CTP synthase -
  ABKA15_RS02000 (ABKA15_01995) - 405033..405719 (+) 687 WP_065428430.1 phenylalanine--tRNA ligase beta subunit-related protein -
  ABKA15_RS02005 (ABKA15_02000) amiA3 405884..407860 (+) 1977 WP_049514169.1 peptide ABC transporter substrate-binding protein Regulator
  ABKA15_RS02010 (ABKA15_02005) amiA3 408057..410036 (+) 1980 WP_106388159.1 peptide ABC transporter substrate-binding protein Regulator
  ABKA15_RS02015 (ABKA15_02010) amiC 410410..411906 (+) 1497 WP_106388160.1 ABC transporter permease Regulator
  ABKA15_RS02020 (ABKA15_02015) amiD 411906..412832 (+) 927 WP_106388161.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72298.69 Da        Isoelectric Point: 7.8805

>NTDB_id=1009096 ABKA15_RS02005 WP_049514169.1 405884..407860(+) (amiA3) [Streptococcus sp. KHUD_010]
MKKSKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSGDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDTNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DNVKVDSIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGSGTAALALNIDRQSYNHTAKK
TDEEKNSTKKALLNKDFRQALNFALDRESYAAQVNGKDGAATAIRNMFVPSNFVQVGEKSFSDAVEEKLASYGDDWKGVK
LADSQNGLYNPTKAKEKFAKAKAALQAQGVQFPIHLDVPTVETSKSYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NITYYAPNAAGEDWDISGAVGWNPDYQDPSTYLDILKSTSSDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSSTYYKYIKVGKDAVTKKDYEAAKKKWQK
EKAESNKKAQDELADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1009096 ABKA15_RS02005 WP_049514169.1 405884..407860(+) (amiA3) [Streptococcus sp. KHUD_010]
ATGAAAAAAAGTAAAATCATCGCAGTTGCGGGGTTAGCTCTTTTAACTTCTGGCCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCAGCTGAAACAAAATTTGGTTATGTATATTCTGGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACCACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAGTGGTACACATCAGA
AGGTGAAGAATATGCTGAAGTCAAGGCGCAAGATTTTGTAACTGGACTGAAACATGCTGCCGATAAAAAATCTGAGGCGC
TTTATTTGGTTCAAAACTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGATTTTTCAACGGTAGGTGTG
AAAGCAGTTGATGATTATACTGTTCAGTATACATTGAACAAGCCAGAGCCATATTGGAATTCAAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCCGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGATACTAACTCCATCCTTT
ATAATGGACCATTCTTGATGAAAGCTATCACAGCAAAATCTGCGGTAGAATATGTTAAAAATAAACATTATTGGGATAAA
GATAATGTAAAAGTGGATAGCATCAAGCTTGCTTACTATGATGGTCAAGACCAAGACTCATTGGCTCGTAATTTCAAAGA
TGGGGCATACTCATACGCACGCCTCTTCCCAACAAGTTCAAACTTTGCAACTTTTGAAAAACAATTCAAGGACAATATCT
ATACAGCAGAAGCAGGCTCTGGAACGGCTGCTTTAGCCCTTAATATTGACCGTCAATCTTACAACCATACGGCTAAGAAA
ACAGATGAAGAAAAAAATTCAACGAAAAAGGCATTGTTGAACAAAGACTTCCGTCAAGCTTTGAACTTTGCACTTGATCG
CGAATCTTATGCAGCACAAGTAAATGGTAAAGATGGTGCTGCCACAGCAATCCGCAATATGTTTGTACCATCTAATTTTG
TCCAAGTAGGAGAAAAATCATTTAGTGATGCTGTAGAAGAAAAATTAGCAAGCTATGGCGATGACTGGAAGGGTGTCAAA
CTAGCTGATTCACAAAACGGCTTGTACAATCCAACAAAAGCAAAAGAAAAATTTGCAAAAGCAAAAGCAGCTCTGCAAGC
TCAAGGTGTACAGTTCCCAATCCACTTAGATGTTCCTACTGTGGAAACTTCTAAGAGCTACGTTGCTCGGATGCAGTCTT
TAAAACAATCTGTTGAAAAAGTGCTTGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGACGACTTTAAT
AACATCACTTACTATGCTCCAAATGCAGCTGGAGAAGACTGGGATATCTCAGGCGCTGTTGGTTGGAATCCCGACTATCA
AGATCCATCTACTTATCTTGATATTTTGAAATCAACATCTTCTGATAATACGAAAACTTGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCCCAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTCAA
CCTACTATAAATACATTAAAGTCGGTAAAGATGCTGTCACGAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGCTGAGTCTAATAAAAAAGCTCAAGACGAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8W3I0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

64.188

100

0.643
  amiA3 Streptococcus thermophilus LMG 18311

63.885

100

0.64
  amiA Streptococcus salivarius strain HSISS4

62.918

100

0.629

Multiple sequence alignment