Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ABKA15_RS02020 Genome accession   NZ_CP157941
Coordinates   411906..412832 (+) Length   308 a.a.
NCBI ID   WP_106388161.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_010     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 406906..417832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS02010 (ABKA15_02005) amiA3 408057..410036 (+) 1980 WP_106388159.1 peptide ABC transporter substrate-binding protein Regulator
  ABKA15_RS02015 (ABKA15_02010) amiC 410410..411906 (+) 1497 WP_106388160.1 ABC transporter permease Regulator
  ABKA15_RS02020 (ABKA15_02015) amiD 411906..412832 (+) 927 WP_106388161.1 oligopeptide ABC transporter permease OppC Regulator
  ABKA15_RS02025 (ABKA15_02020) amiE 412841..413908 (+) 1068 WP_106388162.1 ABC transporter ATP-binding protein Regulator
  ABKA15_RS02030 (ABKA15_02025) amiF 413919..414842 (+) 924 WP_049514159.1 ATP-binding cassette domain-containing protein Regulator
  ABKA15_RS02035 (ABKA15_02030) - 414985..415809 (+) 825 Protein_399 Cof-type HAD-IIB family hydrolase -
  ABKA15_RS02040 (ABKA15_02035) - 415883..416848 (-) 966 WP_117644842.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34515.56 Da        Isoelectric Point: 9.7392

>NTDB_id=1009099 ABKA15_RS02020 WP_106388161.1 411906..412832(+) (amiD) [Streptococcus sp. KHUD_010]
MATIDKTKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTVIMLGILVAIILMSFIYPIFSDFDFNDVSKVNDFGAR
YIKPNGQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPNFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1009099 ABKA15_RS02020 WP_106388161.1 411906..412832(+) (amiD) [Streptococcus sp. KHUD_010]
ATGGCTACAATTGATAAGACTAAGTTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTTATGCGTCAGTTCCTAAAAAAGAAATCAACAGTTATCATGTTGGGAATTTTGGTCGCTATTA
TTTTGATGAGTTTCATTTATCCGATTTTCTCAGATTTTGACTTTAACGATGTCAGCAAGGTGAATGATTTCGGTGCGCGT
TATATTAAACCAAATGGGCAATATTGGTTTGGTACAGATAGCAACGGAAAATCTCTTTTTGACGGAGTATGGTTTGGAGC
TCGTAACTCTATCCTCATTTCTGTCATTGCAACCGTGATTAACTTAGTTATTGGTATTGTGATTGGTGGTATCTGGGGAA
TTTCAAAAACCGTTGACCGTATTATGATGGAAGTGTACAATATCATTTCTAACATCCCATCTCTCTTGATTGTCATTGTC
TTGACTTATTCAATTGGTGCTGGTTTCTGGAACTTGATTTTTGCTATGACCATCACAGGTTGGGTTGGGATTGCTTATAC
GATTCGTATCCAAATCATGCGTTATCGTGACTTGGAATACAACCTTGCCAGTCGTACCTTAGGAACGCCAACACTGAAAA
TCATTGTAAAAAATATCATGCCACAATTGGTTTCTGTTATTGTGACCACGGCTTCACAACTGCTGCCAAATTTCATTTCT
TATGAAGCATTCCTATCGTTCTTTGGTTTGGGGCTTCCTGTCACAGTACCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAACGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCCCTCTCATTATTCGTTG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

87.013

100

0.87
  amiD Streptococcus thermophilus LMG 18311

85.065

100

0.851
  amiD Streptococcus thermophilus LMD-9

85.065

100

0.851

Multiple sequence alignment