Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ABKA15_RS02015 Genome accession   NZ_CP157941
Coordinates   410410..411906 (+) Length   498 a.a.
NCBI ID   WP_106388160.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_010     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 405410..416906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS02005 (ABKA15_02000) amiA3 405884..407860 (+) 1977 WP_049514169.1 peptide ABC transporter substrate-binding protein Regulator
  ABKA15_RS02010 (ABKA15_02005) amiA3 408057..410036 (+) 1980 WP_106388159.1 peptide ABC transporter substrate-binding protein Regulator
  ABKA15_RS02015 (ABKA15_02010) amiC 410410..411906 (+) 1497 WP_106388160.1 ABC transporter permease Regulator
  ABKA15_RS02020 (ABKA15_02015) amiD 411906..412832 (+) 927 WP_106388161.1 oligopeptide ABC transporter permease OppC Regulator
  ABKA15_RS02025 (ABKA15_02020) amiE 412841..413908 (+) 1068 WP_106388162.1 ABC transporter ATP-binding protein Regulator
  ABKA15_RS02030 (ABKA15_02025) amiF 413919..414842 (+) 924 WP_049514159.1 ATP-binding cassette domain-containing protein Regulator
  ABKA15_RS02035 (ABKA15_02030) - 414985..415809 (+) 825 Protein_399 Cof-type HAD-IIB family hydrolase -
  ABKA15_RS02040 (ABKA15_02035) - 415883..416848 (-) 966 WP_117644842.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55819.93 Da        Isoelectric Point: 10.0808

>NTDB_id=1009098 ABKA15_RS02015 WP_106388160.1 410410..411906(+) (amiC) [Streptococcus sp. KHUD_010]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KANSSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYL
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFIHQNFVRLNLGTSYPTYANLPVLQVISQGQGQTQTSEVQFPTGKKTSSV
NIYTRTYKSPKQADARDVANYGKDDPYTATESNYQYPSMIVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSSIPNSVIGVITGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTVLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1009098 ABKA15_RS02015 WP_106388160.1 410410..411906(+) (amiC) [Streptococcus sp. KHUD_010]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACGCTGACTTACACCATTAT
CTATACCATGGTGCCTAGGAAGTTGATTTTCAAACAGGACCCAAACTATAACAAAATAGCGACAACTCCTGATAAAAAGA
CCAATTACGAAAATACGATTTTTGAGCGCATGGGTTACATTGACTACTATGATACGAAGGAATTGCAAGAAAAAGCTAGT
AAAGCGAATTCCTCAGTAACAGTGGAGCCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGTTGGGGCG
TGGTTGGAAATTGCAGCAATTCAAAGAAAGTAAGCAATTTTATGCAACTCGAGAGGTTCCGGTCTATGAACGCGTTCTTG
GTTTCTATGGTAATTTGATTCAAATTGATCATACAGGGGCTGTGAAAGATGCTTCTAATCCAAACTTGAAGCGTTATCTT
CGTATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATACTTGTTATATTTCAACAG
TCAATTTCCATTTATCCATCAAAATTTTGTAAGATTAAATTTGGGAACATCTTATCCAACCTATGCAAATCTCCCTGTCC
TACAAGTTATTTCACAAGGGCAAGGTCAAACGCAGACTTCAGAAGTTCAATTTCCAACAGGAAAGAAAACATCATCTGTT
AATATTTATACACGTACATATAAGTCTCCAAAACAAGCCGATGCACGCGATGTTGCTAATTACGGAAAAGATGATCCTTA
TACGGCGACAGAGAGCAATTATCAATATCCATCTATGATTGTGAGCTCTTCTATTGTTGGGTTGATTGGTTTGGCCTTGT
CATACTTAATCGCCGTTCCACTTGGATCTTATATGGCTCGCTTTAAGAATACATTGTTTGATAGTATTTCAACCGGTGCT
TTGACTTTCTTAATGTCACTGCCAACTATTGCCTTGGTTTATATCATTCGCTTGATTGGTTCAGCGATTGGCTTGCCTGA
TTCATTTCCTATTTTGGGAGCAGGTGATTGGCGCTCTTATGTGCTGCCGGCAGTTATTCTTGGACTCTTGAGTGCGCCTT
GGACAGCCGTTTGGATTCGCCGTTATATGATTGACTTGCAATCACAAGATTTTGTTCGTTTTGCACGTGCAAAAGGTCTT
TCTGAAAAAGAAATTTCTAATAAACATATTTTCAAAAATGCCATGGTGCCACTTGTATCCAGCATTCCAAACTCAGTTAT
TGGGGTTATTACAGGTGCAACTTTGACTGAAACAGTCTTTGCTTTCCCTGGTATGGGTAAGATGTTGATTGACTCTGTTA
AAGCTTCAAACAATTCTATGGTCGTTGGTCTTGTCTTTATCTTTACTTGTCTTTCTATCTTCGCTCTTCTATTGGGTGAT
ATTCTGATGACAGTACTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.321

100

0.803
  amiC Streptococcus thermophilus LMG 18311

79.518

100

0.795
  amiC Streptococcus thermophilus LMD-9

79.317

100

0.793

Multiple sequence alignment