Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ABKA15_RS02030 Genome accession   NZ_CP157941
Coordinates   413919..414842 (+) Length   307 a.a.
NCBI ID   WP_049514159.1    Uniprot ID   A0A7L8W3M5
Organism   Streptococcus sp. KHUD_010     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 408919..419842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS02015 (ABKA15_02010) amiC 410410..411906 (+) 1497 WP_106388160.1 ABC transporter permease Regulator
  ABKA15_RS02020 (ABKA15_02015) amiD 411906..412832 (+) 927 WP_106388161.1 oligopeptide ABC transporter permease OppC Regulator
  ABKA15_RS02025 (ABKA15_02020) amiE 412841..413908 (+) 1068 WP_106388162.1 ABC transporter ATP-binding protein Regulator
  ABKA15_RS02030 (ABKA15_02025) amiF 413919..414842 (+) 924 WP_049514159.1 ATP-binding cassette domain-containing protein Regulator
  ABKA15_RS02035 (ABKA15_02030) - 414985..415809 (+) 825 Protein_399 Cof-type HAD-IIB family hydrolase -
  ABKA15_RS02040 (ABKA15_02035) - 415883..416848 (-) 966 WP_117644842.1 LacI family DNA-binding transcriptional regulator -
  ABKA15_RS02045 (ABKA15_02040) - 416829..418286 (-) 1458 WP_186832678.1 sucrose-6-phosphate hydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34860.11 Da        Isoelectric Point: 6.7833

>NTDB_id=1009101 ABKA15_RS02030 WP_049514159.1 413919..414842(+) (amiF) [Streptococcus sp. KHUD_010]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSHGEIFFEGKKINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERKKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAKTEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDANQHDYSTDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1009101 ABKA15_RS02030 WP_049514159.1 413919..414842(+) (amiF) [Streptococcus sp. KHUD_010]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAGGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCTGGTTCTGGTAAAACGACAATTGGTCGTG
CGATTATTGGTTTAAATGATACGAGTCATGGAGAGATTTTCTTTGAAGGGAAAAAAATTAATGGCAAAAAATCAAAAGAA
GAAGAGTCAGAAATCATTCGTAAAATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATCATTTCGGAAGGCTTGTATAATTTCCACTTATTTAAAGATGAAGAAGAGCGCAAGAAAAAAGTGAAAGATATTA
TTCATGAAGTTGGATTGTTATCAGAGCATTTAACGCGTTACCCGCATGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGATTTTGTCATTGCAGATGAGCCGATTTCAGCCTTGGACGTGTCTGTGCGGGC
GCAAGTTTTAAACCTACTGAAAAAATTCCAAAAAGAATTAGGTTTAACTTACCTCTTTATTGCTCACGATTTATCGGTTG
TACGCTTCATTTCAGATCGTATTGCGGTAATTTATAAGGGTGTGATTGTCGAAGTAGCTAAAACAGAAGAACTCTTTAAC
AATCCGATTCATCCTTATACTCAGTCTTTATTATCAGCTGTGCCAATTCCAGACCCAATCTTGGAACGGAAGAAAGTGTT
GAAAGTCTATGATGCTAATCAGCATGATTATTCAACGGATAAGCCAGAAATGGTCGAAATTCGTCCTGGACACTTTGTGT
GGGCTAATAAAGCAGAAGTTGAAAAATATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8W3M5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.908

99.674

0.876
  amiF Streptococcus salivarius strain HSISS4

87.908

99.674

0.876
  amiF Streptococcus thermophilus LMD-9

87.582

99.674

0.873

Multiple sequence alignment