Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABNP43_RS16540 Genome accession   NZ_CP157878
Coordinates   3179930..3180397 (-) Length   155 a.a.
NCBI ID   WP_349926177.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCu11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3174930..3185397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS16505 (ABNP43_16485) fliW 3175066..3175500 (-) 435 WP_345911144.1 flagellar assembly protein FliW -
  ABNP43_RS16510 (ABNP43_16490) - 3175529..3176107 (-) 579 WP_349925105.1 DUF6470 family protein -
  ABNP43_RS16515 (ABNP43_16495) flgL 3176154..3177065 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  ABNP43_RS16520 (ABNP43_16500) flgK 3177074..3178594 (-) 1521 WP_138826534.1 flagellar hook-associated protein FlgK -
  ABNP43_RS16525 (ABNP43_16505) - 3178610..3179092 (-) 483 WP_007499977.1 flagellar protein FlgN -
  ABNP43_RS16530 (ABNP43_16510) flgM 3179111..3179374 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABNP43_RS16535 (ABNP43_16515) - 3179454..3179873 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ABNP43_RS16540 (ABNP43_16520) comFC 3179930..3180397 (-) 468 WP_349926177.1 ComF family protein Machinery gene
  ABNP43_RS16545 (ABNP43_16525) - 3180449..3180652 (-) 204 Protein_3202 hypothetical protein -
  ABNP43_RS16550 (ABNP43_16530) - 3180613..3180906 (-) 294 WP_008348267.1 competence protein ComFB -
  ABNP43_RS16555 (ABNP43_16535) comFA 3180971..3182098 (-) 1128 WP_349925106.1 DEAD/DEAH box helicase Machinery gene
  ABNP43_RS16560 (ABNP43_16540) - 3182470..3183312 (-) 843 WP_007499966.1 DegV family protein -
  ABNP43_RS16565 (ABNP43_16545) degU 3183524..3184213 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17738.77 Da        Isoelectric Point: 10.9336

>NTDB_id=1008842 ABNP43_RS16540 WP_349926177.1 3179930..3180397(-) (comFC) [Bacillus altitudinis strain SCu11]
MNRSVYAYNNFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSINEPVLVPIPLSKERLKERGFNQSMMLASMIGGPIL
EPLIKVHQRKQSKKRKNERLHQQNLFQLRQSNPIVPKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1008842 ABNP43_RS16540 WP_349926177.1 3179930..3180397(-) (comFC) [Bacillus altitudinis strain SCu11]
ATGAATCGGTCTGTTTATGCTTACAACAACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTT
AGCTGATCTATTTAAAAAAGATGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAACGAACCGGTGCTTGTCCCAATTC
CTTTGAGTAAAGAGAGATTAAAGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTG
GAGCCACTTATAAAGGTACATCAAAGGAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCA
ATTAAGGCAGTCAAACCCGATCGTTCCAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATC
ATGCAGCAAAAATTTTAAAAGACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(89-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.548

100

0.535
  comFC/cflB Streptococcus mitis NCTC 12261

41.83

98.71

0.413
  comFC/cflB Streptococcus mitis SK321

41.83

98.71

0.413
  comFC/cflB Streptococcus pneumoniae TIGR4

41.176

98.71

0.406
  comFC/cflB Streptococcus pneumoniae Rx1

41.176

98.71

0.406
  comFC/cflB Streptococcus pneumoniae D39

41.176

98.71

0.406
  comFC/cflB Streptococcus pneumoniae R6

41.176

98.71

0.406
  comFC Lactococcus lactis subsp. cremoris KW2

41.958

92.258

0.387

Multiple sequence alignment