Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABNP43_RS16555 Genome accession   NZ_CP157878
Coordinates   3180971..3182098 (-) Length   375 a.a.
NCBI ID   WP_349925106.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCu11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3175971..3187098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS16515 (ABNP43_16495) flgL 3176154..3177065 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  ABNP43_RS16520 (ABNP43_16500) flgK 3177074..3178594 (-) 1521 WP_138826534.1 flagellar hook-associated protein FlgK -
  ABNP43_RS16525 (ABNP43_16505) - 3178610..3179092 (-) 483 WP_007499977.1 flagellar protein FlgN -
  ABNP43_RS16530 (ABNP43_16510) flgM 3179111..3179374 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABNP43_RS16535 (ABNP43_16515) - 3179454..3179873 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ABNP43_RS16540 (ABNP43_16520) comFC 3179930..3180397 (-) 468 WP_349926177.1 ComF family protein Machinery gene
  ABNP43_RS16545 (ABNP43_16525) - 3180449..3180652 (-) 204 Protein_3202 hypothetical protein -
  ABNP43_RS16550 (ABNP43_16530) - 3180613..3180906 (-) 294 WP_008348267.1 competence protein ComFB -
  ABNP43_RS16555 (ABNP43_16535) comFA 3180971..3182098 (-) 1128 WP_349925106.1 DEAD/DEAH box helicase Machinery gene
  ABNP43_RS16560 (ABNP43_16540) - 3182470..3183312 (-) 843 WP_007499966.1 DegV family protein -
  ABNP43_RS16565 (ABNP43_16545) degU 3183524..3184213 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ABNP43_RS16570 (ABNP43_16550) degS 3184278..3185453 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ABNP43_RS16575 (ABNP43_16555) - 3185675..3186343 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42931.93 Da        Isoelectric Point: 10.5323

>NTDB_id=1008843 ABNP43_RS16555 WP_349925106.1 3180971..3182098(-) (comFA) [Bacillus altitudinis strain SCu11]
MLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGM
SVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDERLRF
AVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHEHITK
KKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIF
TESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=1008843 ABNP43_RS16555 WP_349925106.1 3180971..3182098(-) (comFA) [Bacillus altitudinis strain SCu11]
ATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAGACAAGTTGAATT
AACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAAACAAATTTGATC
TGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTAAATAACGGAATG
AGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATTTCAAGGACTGAA
TATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCCATCAGCTAATGA
GATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCATTTCCTTATTCAATTGATGAACGGCTTCGGTTT
GCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAATGCAAAAAGATGT
TGCTCGTAGACAATTAGAAGCGATCAAAATTCCACTGCGCTTCCACCAAAAACCGTTACCTGTCCCAACATTTCAATGGG
TTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAACATATCACAAAG
AAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGGTCAAGATGTAAA
TGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGATACGATGTATTGG
TTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAATCTCCTATTTTT
ACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGTGTACTTTTTTCA
TTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAAAAGAGTTTTCTG
AAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(32-180)

Helicase conserved C-terminal domain (Helicase_C)

(236-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

55.676

98.667

0.549
  comFA/cflA Streptococcus pneumoniae Rx1

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae D39

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae R6

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae TIGR4

40.96

94.4

0.387
  comFA/cflA Streptococcus mitis NCTC 12261

40.678

94.4

0.384
  comFA Latilactobacillus sakei subsp. sakei 23K

38.587

98.133

0.379
  comFA/cflA Streptococcus mitis SK321

39.548

94.4

0.373
  comFA Lactococcus lactis subsp. cremoris KW2

37.432

97.6

0.365

Multiple sequence alignment