Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ABKJ27_RS07910 Genome accession   NZ_CP157578
Coordinates   1640311..1642290 (-) Length   659 a.a.
NCBI ID   WP_261050938.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635311..1647290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS07890 (ABKJ27_07900) amiF 1635809..1636735 (-) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  ABKJ27_RS07895 (ABKJ27_07905) amiE 1636746..1637813 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  ABKJ27_RS07900 (ABKJ27_07910) amiD 1637822..1638748 (-) 927 WP_004255894.1 oligopeptide ABC transporter permease OppC Regulator
  ABKJ27_RS07905 (ABKJ27_07915) amiC 1638748..1640244 (-) 1497 WP_150922884.1 ABC transporter permease Regulator
  ABKJ27_RS07910 (ABKJ27_07920) amiA 1640311..1642290 (-) 1980 WP_261050938.1 peptide ABC transporter substrate-binding protein Regulator
  ABKJ27_RS07920 (ABKJ27_07930) - 1642713..1644044 (-) 1332 WP_410011646.1 hemolysin family protein -
  ABKJ27_RS07925 (ABKJ27_07935) endA 1644312..1645136 (-) 825 WP_410011647.1 DNA-entry nuclease EndA Machinery gene
  ABKJ27_RS07930 (ABKJ27_07940) - 1645175..1645363 (-) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  ABKJ27_RS07935 (ABKJ27_07945) murA 1645356..1646639 (-) 1284 WP_410011648.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ABKJ27_RS07940 (ABKJ27_07950) - 1646663..1646893 (-) 231 WP_004255861.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72962.06 Da        Isoelectric Point: 4.8459

>NTDB_id=1007480 ABKJ27_RS07910 WP_261050938.1 1640311..1642290(-) (amiA) [Streptococcus sp. KHUD_011]
MKKSRVFVAAGVALFATGVLVACGNSKSSDSTAPKTYGYVYSADPETLDYLISGKESTKVATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAETSVKGLSDYLAGNSKDFSTV
GVKAVDDYTLEYTLNQPEPYWNSKMVYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKENVHLDTATLAYFDGSDQESLERNFTSGAYSFARLYPTSSNFSKVEESYKDNIFYTPSGAGIGGLGVNIDRQNYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTGYSAQVNGKEGAPLAVRNLFVKPDFVTAGEKTFGDLVAEKVKTYGDEWKD
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTSKNFVARIQSFKQSVEKVLGEENVVIDIQQISKDE
FFNATYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKSTNSEQTKTYMGYDDPSNAAAAKVGVKDYDKLLDEAGKETS
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFSASYSQSGDKGSNLYFKYIQLQDKVVTKADYEQAREKWI
KEKKESNEKVQKELASHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1007480 ABKJ27_RS07910 WP_261050938.1 1640311..1642290(-) (amiA) [Streptococcus sp. KHUD_011]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAGTTGCTTTGTTTGCGACGGGTGTGTTAGTGGCTTGTGGGAATTCAAA
ATCATCTGATTCGACAGCTCCAAAGACCTATGGCTATGTCTATTCAGCTGATCCAGAAACATTGGACTATCTTATCTCTG
GAAAAGAGAGTACGAAAGTGGCTACTTCAAACGGGATCGATGGCCTCTTCACAAATGACAAATACGGGAATTTGACTCCT
GCGGTTGCAGAAGACTGGTCTGTATCAAAAGACGGATTGACATATACCTACAAAATTCGTAAAGGTGTCAAATGGATGAC
ATCCGATGGTGAAGAATATGCCGAAGTGACTGCTAAAGACTTCGTGAATGGATTGAAACATGCGGCAGATAAGAAATCAG
AAGCTCTATATCTAGCTGAAACTTCTGTTAAAGGTTTATCTGATTATTTGGCTGGGAATTCAAAAGATTTCTCTACAGTA
GGTGTTAAAGCGGTTGATGACTATACTCTTGAGTATACTTTGAACCAACCAGAACCTTACTGGAACTCTAAGATGGTTTA
TTCAATTTTCTGGCCATTAAACGAAGAATTTGAAAAATCAAAAGGCTCTGATTTTGCTAAAGCGACAGATCCTACATCAT
TGCTATATAATGGACCTTTCTTGCTTAAAGGTTTGACTGCTAAATCTTCTATCGAATTTGCTAAGAACGAGCAGTACTGG
GATAAAGAGAATGTTCATTTAGATACAGCAACACTTGCATATTTTGATGGTTCGGACCAAGAATCACTTGAGCGTAACTT
TACAAGTGGAGCTTATAGTTTTGCTCGTCTTTACCCAACAAGTTCAAACTTCTCAAAGGTAGAGGAGTCATACAAGGATA
ATATTTTCTACACTCCGTCAGGAGCTGGTATTGGAGGTTTAGGTGTAAATATCGATCGACAAAATTACAAATATACATCT
AAAACGACAGATGAAGAGAAAACATCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGCCAAGCCTTGAACTTTGCCTT
TGACCGTACAGGTTATTCTGCTCAAGTTAACGGTAAAGAAGGTGCTCCTCTCGCAGTTCGTAATTTATTTGTGAAACCAG
ACTTTGTGACTGCAGGCGAAAAAACTTTCGGTGACTTGGTTGCTGAAAAAGTTAAGACTTATGGAGATGAGTGGAAAGAT
GTAAACTTTGCTGATGGTCAAGACGGTCTCTTTAACGCTGACAAAGCTAAAGCAGAATTTGCTAAAGCTAAAACTGCTCT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATGTTCCAGTAGACCAAACCTCTAAAAACTTTGTCGCACGGATTC
AGTCGTTCAAACAATCAGTTGAAAAAGTTTTAGGCGAAGAAAATGTTGTCATCGATATTCAACAAATTTCTAAAGATGAA
TTCTTTAATGCGACTTATTATGCTGCTAATGCGGCAGCTGAGGATTGGGATCTTTCAGGTGCGGTTGGATGGAATCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCCTTAAATCAACTAATAGTGAGCAAACGAAAACTTATATGGGGTATGATG
ACCCATCAAATGCAGCTGCAGCTAAAGTTGGTGTGAAAGATTACGATAAATTGCTTGATGAAGCTGGAAAAGAAACAAGT
GATCTTAACAAACGTTATGAAAAATATGCTGCTGCTCAAGCTTGGTTGACAGACAGTTCACTCTTCTTACCAGCTATGTC
TTCTAGTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCTCAGCTTCTTATAGCCAATCTGGAGACAAAGGTTCAA
ATCTCTACTTCAAATATATTCAGTTACAAGACAAAGTTGTAACAAAGGCTGATTATGAACAAGCTCGTGAGAAATGGATT
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.83

100

0.678
  amiA3 Streptococcus thermophilus LMD-9

67.576

100

0.677
  amiA3 Streptococcus thermophilus LMG 18311

67.273

100

0.674

Multiple sequence alignment