Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ABKJ27_RS07890 Genome accession   NZ_CP157578
Coordinates   1635809..1636735 (-) Length   308 a.a.
NCBI ID   WP_001291284.1    Uniprot ID   V8I8Q2
Organism   Streptococcus sp. KHUD_011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1630809..1641735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS07865 (ABKJ27_07875) - 1631609..1631857 (-) 249 WP_000364990.1 YneF family protein -
  ABKJ27_RS07870 (ABKJ27_07880) - 1631999..1632586 (-) 588 Protein_1531 alpha-glucosidase C-terminal domain-containing protein -
  ABKJ27_RS07875 (ABKJ27_07885) - 1632656..1633459 (-) 804 WP_125454633.1 ABC transporter ATP-binding protein -
  ABKJ27_RS07880 (ABKJ27_07890) - 1633472..1634365 (-) 894 WP_000011439.1 ABC transporter permease -
  ABKJ27_RS07885 (ABKJ27_07895) - 1634377..1635354 (-) 978 WP_410011645.1 ABC transporter substrate binding protein -
  ABKJ27_RS07890 (ABKJ27_07900) amiF 1635809..1636735 (-) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  ABKJ27_RS07895 (ABKJ27_07905) amiE 1636746..1637813 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  ABKJ27_RS07900 (ABKJ27_07910) amiD 1637822..1638748 (-) 927 WP_004255894.1 oligopeptide ABC transporter permease OppC Regulator
  ABKJ27_RS07905 (ABKJ27_07915) amiC 1638748..1640244 (-) 1497 WP_150922884.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34777.80 Da        Isoelectric Point: 6.5105

>NTDB_id=1007476 ABKJ27_RS07890 WP_001291284.1 1635809..1636735(-) (amiF) [Streptococcus sp. KHUD_011]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1007476 ABKJ27_RS07890 WP_001291284.1 1635809..1636735(-) (amiF) [Streptococcus sp. KHUD_011]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCAGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CCATCATCGGTCTTAATGATACAAGTAATGGGGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCAGAATTGATTCGTCGTATCCAGATGATTTTTCAAGATCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATCTGTTCAAGGATGAAGAAGAACGTAAAGAGAAAGTTAAAAATATTA
TCCGTGAAGTGGGGCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCCATTTCAGCCTTGGACGTTTCTGTGCGTGC
TCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTCATCGCCCATGACTTGTCTGTCG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATCCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCCGAATTAGCGCGTTACCAACAAGGGTTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8I8Q2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.902

99.026

0.851
  amiF Streptococcus salivarius strain HSISS4

85.902

99.026

0.851
  amiF Streptococcus thermophilus LMD-9

85.574

99.026

0.847

Multiple sequence alignment