Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ABKJ27_RS07900 Genome accession   NZ_CP157578
Coordinates   1637822..1638748 (-) Length   308 a.a.
NCBI ID   WP_004255894.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632822..1643748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS07880 (ABKJ27_07890) - 1633472..1634365 (-) 894 WP_000011439.1 ABC transporter permease -
  ABKJ27_RS07885 (ABKJ27_07895) - 1634377..1635354 (-) 978 WP_410011645.1 ABC transporter substrate binding protein -
  ABKJ27_RS07890 (ABKJ27_07900) amiF 1635809..1636735 (-) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  ABKJ27_RS07895 (ABKJ27_07905) amiE 1636746..1637813 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  ABKJ27_RS07900 (ABKJ27_07910) amiD 1637822..1638748 (-) 927 WP_004255894.1 oligopeptide ABC transporter permease OppC Regulator
  ABKJ27_RS07905 (ABKJ27_07915) amiC 1638748..1640244 (-) 1497 WP_150922884.1 ABC transporter permease Regulator
  ABKJ27_RS07910 (ABKJ27_07920) amiA 1640311..1642290 (-) 1980 WP_261050938.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34547.47 Da        Isoelectric Point: 9.6485

>NTDB_id=1007478 ABKJ27_RS07900 WP_004255894.1 1637822..1638748(-) (amiD) [Streptococcus sp. KHUD_011]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYSIRIQIMRYRDLEYNLASRTLGTPTFKIVVKNIMPQLVSVIVTTTSQMLPAFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1007478 ABKJ27_RS07900 WP_004255894.1 1637822..1638748(-) (amiD) [Streptococcus sp. KHUD_011]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAGCCATTGATGCGCCAGCTTA
TTCATACTGGGGTTCAGTGTTTAGACAATTTATGAAGAAGAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCTATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAAGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCTCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGTGTGATGATGGAAGTTTATAATGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCTATGAGTGTGACTACTTGGATTGGTATTGCTTACTC
AATTCGTATTCAGATCATGCGTTATCGTGACTTGGAGTATAACCTTGCTTCACGTACACTTGGAACACCAACCTTTAAGA
TTGTTGTAAAAAACATTATGCCACAATTGGTATCTGTTATCGTTACGACGACATCTCAAATGCTTCCAGCCTTTATCTCA
TACGAAGCTTTCCTTTCATTCTTTGGACTTGGATTGCCGATTACAGTTCCAAGTTTAGGTCGTTTGATTTCAGATTACTC
TCAGAACGTAACGACAAATGCATACCTCTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTATCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

84.416

100

0.844
  amiD Streptococcus thermophilus LMG 18311

82.792

100

0.828
  amiD Streptococcus thermophilus LMD-9

82.792

100

0.828

Multiple sequence alignment