Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ABKJ27_RS07905 Genome accession   NZ_CP157578
Coordinates   1638748..1640244 (-) Length   498 a.a.
NCBI ID   WP_150922884.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633748..1645244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS07885 (ABKJ27_07895) - 1634377..1635354 (-) 978 WP_410011645.1 ABC transporter substrate binding protein -
  ABKJ27_RS07890 (ABKJ27_07900) amiF 1635809..1636735 (-) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  ABKJ27_RS07895 (ABKJ27_07905) amiE 1636746..1637813 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  ABKJ27_RS07900 (ABKJ27_07910) amiD 1637822..1638748 (-) 927 WP_004255894.1 oligopeptide ABC transporter permease OppC Regulator
  ABKJ27_RS07905 (ABKJ27_07915) amiC 1638748..1640244 (-) 1497 WP_150922884.1 ABC transporter permease Regulator
  ABKJ27_RS07910 (ABKJ27_07920) amiA 1640311..1642290 (-) 1980 WP_261050938.1 peptide ABC transporter substrate-binding protein Regulator
  ABKJ27_RS07920 (ABKJ27_07930) - 1642713..1644044 (-) 1332 WP_410011646.1 hemolysin family protein -
  ABKJ27_RS07925 (ABKJ27_07935) endA 1644312..1645136 (-) 825 WP_410011647.1 DNA-entry nuclease EndA Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55732.24 Da        Isoelectric Point: 9.2367

>NTDB_id=1007479 ABKJ27_RS07905 WP_150922884.1 1638748..1640244(-) (amiC) [Streptococcus sp. KHUD_011]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
QMDASVTVEANDTNKAIYEKYIKQIGHGWTLGEFTESGQFYATREIPIFERVFKFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
NIYSRTYKSPSQADSREVANYGKDDPYTATESNYQYPSMIASSAIVGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGA
LTFLMALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1007479 ABKJ27_RS07905 WP_150922884.1 1638748..1640244(-) (amiC) [Streptococcus sp. KHUD_011]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCTATCTTCTTAGTAACAACCTTGACTTACACGATTAT
CTATACAATGGTTCCTCGAAAATTGATTTTCAAACAGGATACCAACTATAACAAGATTGCTACAACTGCTGATAAACGTG
ATAACTATGAGAATACCGTTTATGAGCGTATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAAAGCTAGC
CAGATGGATGCTTCTGTAACAGTTGAAGCCAATGATACCAACAAGGCTATCTATGAAAAATACATCAAACAAATCGGTCA
TGGTTGGACCCTGGGAGAATTTACTGAAAGTGGCCAATTCTACGCTACACGTGAAATTCCAATTTTTGAACGTGTGTTTA
AATTCTATGCAAACTTGCTTGATATCGACCACACAAACAAGATTCAGGACCCAGAAAATCCAAATTTGGAGCGTTATTTG
CGTTTTGAAAATGATCCCGCTATCGGCTGGTCTCTGGTAGGTTCAGGGACTAAACACAAGTACCTCTTGTACTTCAATAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAACTTGAATTTGGGTGATTCATATCCAACTTATGCTAATACTCCTGTGC
TTCAAGTTATCACACAAGGACAAGGTCAAACTAAGACATCAGAAGTGCAATTCCCAACTGGTAAGAAAACATCTTCAGTT
AATATCTACTCAAGAACCTACAAATCGCCTAGTCAGGCTGATTCTCGTGAAGTAGCTAACTATGGGAAAGATGACCCATA
TACTGCAACTGAAAGCAACTACCAATATCCTTCTATGATTGCTAGCTCTGCAATCGTTGGATTGATCGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCTATGGCTCGCTTCAAGAACACTTGGATTGATAGCTTCTCAACAGGGGCT
TTGACCTTCTTGATGGCTCTTCCAACCATTGCTTTGGTTTACATTGTTCGTTTGATTGGATCATCAATTGGTCTTCCAGA
TTCATTCCCTATCTTGGGTGCTGGAGATTGGCGTTCGTATGTTTTACCAGCAGTTATCCTTGGTTTATTGGGTGCTCCTG
GTACCGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAGGACTTTGTTCGTTTTGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGGATTCCTGGTGCTGTTAT
CGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTAGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.108

100

0.771
  amiC Streptococcus thermophilus LMG 18311

76.707

100

0.767
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment