Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ABKJ27_RS07925 Genome accession   NZ_CP157578
Coordinates   1644312..1645136 (-) Length   274 a.a.
NCBI ID   WP_410011647.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1639312..1650136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS07910 (ABKJ27_07920) amiA 1640311..1642290 (-) 1980 WP_261050938.1 peptide ABC transporter substrate-binding protein Regulator
  ABKJ27_RS07920 (ABKJ27_07930) - 1642713..1644044 (-) 1332 WP_410011646.1 hemolysin family protein -
  ABKJ27_RS07925 (ABKJ27_07935) endA 1644312..1645136 (-) 825 WP_410011647.1 DNA-entry nuclease EndA Machinery gene
  ABKJ27_RS07930 (ABKJ27_07940) - 1645175..1645363 (-) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  ABKJ27_RS07935 (ABKJ27_07945) murA 1645356..1646639 (-) 1284 WP_410011648.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ABKJ27_RS07940 (ABKJ27_07950) - 1646663..1646893 (-) 231 WP_004255861.1 DUF1146 family protein -
  ABKJ27_RS07945 (ABKJ27_07955) sepM 1646950..1647987 (-) 1038 WP_000727281.1 SepM family pheromone-processing serine protease Regulator
  ABKJ27_RS07950 (ABKJ27_07960) coaD 1647971..1648459 (-) 489 WP_410011649.1 pantetheine-phosphate adenylyltransferase -
  ABKJ27_RS07955 (ABKJ27_07965) rsmD 1648449..1648988 (-) 540 WP_020902000.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABKJ27_RS07960 (ABKJ27_07970) asnA 1649053..1650045 (-) 993 WP_045612763.1 aspartate--ammonia ligase -

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 29864.44 Da        Isoelectric Point: 9.8711

>NTDB_id=1007481 ABKJ27_RS07925 WP_410011647.1 1644312..1645136(-) (endA) [Streptococcus sp. KHUD_011]
MDKKTRQTLIGLLVLLLLSAGSYYIKQMQSTANSPKTKVSQKKQASEAPSQSLAESVLTDAVKSQIKGSLEWNGSGAFIV
NGNKTNLDAKVSSKPYADNKTKTVGKETVPTVANALLSKATRQYKNREETGNGSTSWTPPGWHQVKNLKGTYTHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQAEDSTGQNYYESLVRKALDQNKRVRYRVTLYYASNEDLVPSASQIE
AKSSDGELEFNVLVPNVQKGLQLDYRTGEVTVTQ

Nucleotide


Download         Length: 825 bp        

>NTDB_id=1007481 ABKJ27_RS07925 WP_410011647.1 1644312..1645136(-) (endA) [Streptococcus sp. KHUD_011]
ATGGATAAAAAAACAAGACAGACACTGATCGGACTACTAGTGTTATTGCTTTTATCTGCGGGAAGCTATTATATCAAGCA
GATGCAGTCGACAGCTAATAGTCCTAAAACAAAGGTTAGTCAGAAAAAACAAGCGTCTGAAGCTCCTAGTCAATCATTGG
CAGAAAGTGTCTTGACAGACGCAGTCAAGAGTCAAATAAAAGGGAGTCTGGAGTGGAATGGCTCAGGTGCTTTTATCGTC
AATGGTAATAAAACAAATCTAGATGCCAAGGTTTCAAGTAAGCCCTACGCTGATAATAAAACAAAGACAGTGGGCAAGGA
AACAGTGCCAACCGTAGCAAATGCCCTCTTGTCTAAGGCTACTCGTCAGTACAAGAATCGTGAAGAAACTGGGAATGGTT
CGACTTCATGGACTCCTCCAGGCTGGCATCAGGTTAAGAATCTAAAGGGTACTTATACCCATGCGGTCGATAGAGGTCAC
TTGTTAGGCTATGCCTTGATCGGTGGCTTGGATGGTTTTGATGCTTCTACAAGCAATCCTAAAAACATTGCTGTTCAGAC
AGCCTGGGCAAATCAGGCGCAAGCTGAGGATTCGACAGGGCAAAACTACTATGAAAGCCTGGTACGTAAAGCCTTGGACC
AAAACAAGCGTGTCCGTTACCGTGTAACCCTTTATTATGCTTCAAACGAGGATTTAGTACCTTCAGCTTCACAGATTGAA
GCCAAGTCTTCAGACGGAGAATTGGAATTTAATGTTCTAGTTCCCAATGTTCAAAAGGGGCTTCAACTGGATTACAGAAC
TGGAGAAGTGACTGTTACTCAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(75-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

95.62

100

0.956
  endA Streptococcus pneumoniae D39

95.62

100

0.956
  endA Streptococcus pneumoniae R6

95.62

100

0.956
  endA Streptococcus pneumoniae TIGR4

95.62

100

0.956

Multiple sequence alignment