Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABLU28_RS12565 Genome accession   NZ_CP157495
Coordinates   2503310..2503909 (+) Length   199 a.a.
NCBI ID   WP_003129593.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2498310..2508909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU28_RS12550 (ABLU28_12510) - 2500479..2501642 (+) 1164 WP_406835447.1 DUF998 domain-containing protein -
  ABLU28_RS12555 (ABLU28_12515) spx 2502025..2502423 (-) 399 WP_406835445.1 transcriptional regulator Spx -
  ABLU28_RS12560 (ABLU28_12520) - 2502583..2503113 (-) 531 WP_179884461.1 hypothetical protein -
  ABLU28_RS12565 (ABLU28_12525) clpP 2503310..2503909 (+) 600 WP_003129593.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABLU28_RS12570 (ABLU28_12530) icd 2503974..2505212 (-) 1239 WP_367293560.1 NADP-dependent isocitrate dehydrogenase -
  ABLU28_RS12575 (ABLU28_12535) acnA 2505233..2507779 (-) 2547 Protein_2430 aconitate hydratase AcnA -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22082.24 Da        Isoelectric Point: 4.7423

>NTDB_id=1007209 ABLU28_RS12565 WP_003129593.1 2503310..2503909(+) (clpP) [Lactococcus lactis strain 2B-1]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1007209 ABLU28_RS12565 WP_003129593.1 2503310..2503909(+) (clpP) [Lactococcus lactis strain 2B-1]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGCGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGCATTATCATGCTGACAGGACCTGTTGAAGATGGAATGGCAAATTCTATCATTGCTCAACTTCTTTTCTTGGATG
CACAAGATAACACTAAAGATATTTATCTCTACGTAAATACACCTGGTGGTTCTGTATCTGCTGGTCTTGCCATTGTTGAT
ACAATGAATTTTATCAAATCAGATGTTCAAACTATCGTTATGGGAATGGCTGCCTCTATGGGAACAATCATTGCTTCAAG
CGGAACAAAAGGCAAACGATTCATGTTGCCAAATGCTGAATATCTTATTCACCAACCAATGGGTGGTACAGGTCAAGGCA
CTCAACAAACTGATATGGCTATTGTTGCTGAGCAACTTTTGAAAACTCGTAAACGTTTGGAACAAATTCTTGCTGATAAT
TCCAACCGTTCACTTGAACAAATTCACAAAGATGCCGAACGTGACCATTGGATGGATGCCAAAGAAACTTTGGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCCTTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  clpP Lactococcus lactis subsp. cremoris KW2

99.497

100

0.995
  clpP Streptococcus mutans UA159

87.755

98.492

0.864
  clpP Streptococcus thermophilus LMD-9

87.245

98.492

0.859
  clpP Streptococcus thermophilus LMG 18311

87.245

98.492

0.859
  clpP Streptococcus pyogenes MGAS315

86.224

98.492

0.849
  clpP Streptococcus pyogenes JRS4

86.224

98.492

0.849
  clpP Streptococcus pneumoniae D39

85.128

97.99

0.834
  clpP Streptococcus pneumoniae TIGR4

85.128

97.99

0.834
  clpP Streptococcus pneumoniae R6

85.128

97.99

0.834
  clpP Streptococcus pneumoniae Rx1

85.128

97.99

0.834
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.477

96.985

0.548
  clpP Bacillus subtilis subsp. subtilis str. 168

57.368

95.477

0.548

Multiple sequence alignment