Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ABLB96_RS07015 Genome accession   NZ_CP157428
Coordinates   1444510..1445628 (-) Length   372 a.a.
NCBI ID   WP_348897798.1    Uniprot ID   A0AB39JXG0
Organism   Acinetobacter sp. XH1741     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1439510..1450628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS06985 (ABLB96_06985) - 1440340..1441188 (+) 849 WP_348897794.1 class II glutamine amidotransferase -
  ABLB96_RS06990 (ABLB96_06990) - 1441439..1441894 (+) 456 WP_044099926.1 bacteriohemerythrin -
  ABLB96_RS06995 (ABLB96_06995) - 1442047..1443114 (+) 1068 WP_348897795.1 hypothetical protein -
  ABLB96_RS07000 (ABLB96_07000) - 1443114..1443437 (+) 324 WP_348897796.1 RnfH family protein -
  ABLB96_RS07005 (ABLB96_07005) - 1443493..1443891 (-) 399 WP_348897797.1 outer membrane protein assembly factor BamE -
  ABLB96_RS07010 (ABLB96_07010) fur 1444003..1444440 (+) 438 WP_309456688.1 ferric iron uptake transcriptional regulator -
  ABLB96_RS07015 (ABLB96_07015) pilU 1444510..1445628 (-) 1119 WP_348897798.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABLB96_RS07020 (ABLB96_07020) pilT 1445656..1446693 (-) 1038 WP_107972265.1 type IV pilus twitching motility protein PilT Machinery gene
  ABLB96_RS07025 (ABLB96_07025) - 1446820..1447512 (+) 693 WP_348897799.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABLB96_RS07030 (ABLB96_07030) - 1447620..1448462 (+) 843 WP_348897800.1 undecaprenyl-diphosphate phosphatase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 41939.13 Da        Isoelectric Point: 6.6944

>NTDB_id=1006771 ABLB96_RS07015 WP_348897798.1 1444510..1445628(-) (pilU) [Acinetobacter sp. XH1741]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRKEFAETRECNFAIMNRDKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPSVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHSSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLANEGPDQITDEKQHLTFDRQ

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=1006771 ABLB96_RS07015 WP_348897798.1 1444510..1445628(-) (pilU) [Acinetobacter sp. XH1741]
ATGGATTTTAATGACTTACTCAACCTCATGGTTGAGAAAAAATCATCGGATCTTTTTATTACCGATGGTGTTGCACCATC
TATGAAAATTAATGGTCAAATTGTTCCAATTTCGAAAAATAGCCTTTCAGGCGAAGTGATTGGTCAACTCTTACATTCCA
TTATGAGCGAAAAACAGCGCAAAGAATTTGCAGAGACTCGTGAATGTAACTTTGCCATTATGAACCGTGATAAAACGGCA
CGTTTTCGTGTGAGTGCTTTTCAGCAACGCGACATGCCCGGCATGGTTCTACGTCGAATTGAAACTAAAATTCCTTCAAT
TGATGATTTACAGCTACCATCTGTACTGAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTCGTAGGCGCAACAG
GTACAGGTAAATCAACTTCATTGGCTTCAATGATCAGCCATCGTAACCACAGCTCTAAAGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCATGAACATGCAGGCTGCATCATTACTCAACGTGAAGTCGGTATCGATACAGACTCATTCGA
AATTGCCTTAAAAAATACATTACGACAAGCACCAGATGTCATCTTAATTGGGGAAATTCGTTCTCGTGAAGTCATGGACT
ATGCAATTGGCTTTGCTGAAACAGGCCACCTTGTATTAGCCACAATGCACGCCAACAACGCCAACCAAGCACTCGACCGT
ATTATTCACTTCTTTGAAAGTGACCGTCATAGCCAGCTCTACATGGACTTATCGCTAAACTTAAAGGCCATGATTGCCCA
GCAGCTTATTCCAACACCAGATGGCAATTCACGCCGAGCGGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ATATCCGTAAAGGCGAAATTCATGAAATTAAAGACTTGATGAAACGCTCACGTGAACTGGGTATGCAGACATTTGACCAA
GCTTTATTTGATTTATATAAAGCAGGTCAAATTACATATAAAGATGCGCTTAAACATGCCGACTCGCCAAACGATTTACG
CTTAACCATTAAGCTTGCAAATGAAGGCCCAGATCAAATAACAGACGAAAAACAGCATTTAACTTTCGATCGTCAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(32-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Acinetobacter baylyi ADP1

75.132

100

0.763
  pilU Pseudomonas stutzeri DSM 10701

68.194

99.731

0.68
  pilU Vibrio cholerae strain A1552

53.514

99.462

0.532
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

95.43

0.403
  pilT Legionella pneumophila strain Lp02

39.645

90.86

0.36
  pilT Legionella pneumophila strain ERS1305867

39.645

90.86

0.36

Multiple sequence alignment