Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   FQT45_RS07970 Genome accession   NZ_LR595858
Coordinates   1628194..1628736 (-) Length   180 a.a.
NCBI ID   WP_077322504.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623194..1633736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS07935 (NCTC10228_01632) rsfS 1623912..1624265 (-) 354 WP_077322494.1 ribosome silencing factor -
  FQT45_RS10815 - 1624369..1624530 (-) 162 Protein_1513 hypothetical protein -
  FQT45_RS07945 (NCTC10228_01633) yqeK 1624789..1625382 (-) 594 WP_077322496.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  FQT45_RS07950 (NCTC10228_01634) - 1625379..1626011 (-) 633 WP_077322498.1 nicotinate-nucleotide adenylyltransferase -
  FQT45_RS07955 (NCTC10228_01635) yhbY 1626079..1626387 (-) 309 WP_077322500.1 ribosome assembly RNA-binding protein YhbY -
  FQT45_RS07960 (NCTC10228_01636) yqeH 1626447..1627562 (-) 1116 WP_077322502.1 ribosome biogenesis GTPase YqeH -
  FQT45_RS07965 (NCTC10228_01637) - 1627562..1628089 (-) 528 WP_007894902.1 YqeG family HAD IIIA-type phosphatase -
  FQT45_RS07970 (NCTC10228_01638) comX/sigX/comX2/sigX2 1628194..1628736 (-) 543 WP_077322504.1 sigma-70 family RNA polymerase sigma factor Regulator
  FQT45_RS07975 - 1629058..1630457 (+) 1400 Protein_1520 IS3 family transposase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21835.71 Da        Isoelectric Point: 10.1723

>NTDB_id=1006412 FQT45_RS07970 WP_077322504.1 1628194..1628736(-) (comX/sigX/comX2/sigX2) [Streptococcus pseudoporcinus strain NCTC10228]
MFFFVTFFYNMTIILKEGIIKKPMYELNQLFSQVKPIVFKLMRTYFIQLWETDDWLQEGRLVLYSLIESNPELLTNQKKL
LVYFKTKFSSHIKDTIRHQESFKRKLNRLPYQEISEVSHRIPEKGLILDDFVAYQSIIEELKPYLTMKEQNQFKALLRGE
RFSGRKSLLRKLKPFFIDFQ

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1006412 FQT45_RS07970 WP_077322504.1 1628194..1628736(-) (comX/sigX/comX2/sigX2) [Streptococcus pseudoporcinus strain NCTC10228]
ATGTTCTTTTTTGTAACTTTCTTTTACAATATGACTATCATTTTGAAAGAAGGTATTATTAAAAAGCCTATGTATGAATT
AAATCAACTATTTAGCCAAGTAAAGCCAATTGTTTTTAAGCTAATGCGGACCTATTTTATTCAATTATGGGAAACTGATG
ATTGGCTACAAGAAGGACGTTTAGTTCTATATAGTCTGATCGAAAGTAATCCTGAATTACTAACTAATCAGAAAAAGTTA
CTGGTATATTTTAAAACTAAATTTTCGTCCCATATAAAAGACACCATTCGTCATCAAGAATCTTTCAAACGAAAATTAAA
TCGCTTACCATATCAAGAAATTAGTGAAGTTTCTCATCGGATACCGGAAAAGGGACTCATCCTTGATGATTTTGTTGCTT
ATCAGTCAATTATTGAGGAATTGAAGCCATATTTGACCATGAAAGAACAAAATCAATTTAAAGCATTGCTAAGAGGAGAG
CGCTTTTCTGGACGAAAATCCTTATTGCGTAAGTTAAAGCCTTTCTTTATAGACTTTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.