Detailed information NTG0100573

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: QUD44_RS01925
• Genome accession: NZ_AP027275
• Coordinates: 382751..383350 (-)
• Length: 199 a.a.
• NCBI ID: WP_003134020.1
• Uniprot ID: -
• Organism: Lactococcus formosensis strain MS200408A
• Function: degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 377751..388350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUD44_RS01915 (LFMS200408A_03710)	-	377808..379031 (+)	1224	WP_096368654.1	FtsW/RodA/SpoVE family cell cycle protein	-
QUD44_RS01920 (LFMS200408A_03720)	-	379232..382651 (+)	3420	WP_096368653.1	pyruvate carboxylase	-
QUD44_RS01925 (LFMS200408A_03730)	clpP	382751..383350 (-)	600	WP_003134020.1	ATP-dependent Clp protease proteolytic subunit	Regulator
QUD44_RS01930 (LFMS200408A_03740)	-	383529..383906 (+)	378	WP_096368652.1	VOC family protein	-
QUD44_RS01935 (LFMS200408A_03750)	-	383966..384496 (+)	531	WP_017368814.1	hypothetical protein	-
QUD44_RS01940 (LFMS200408A_03760)	spx	384657..385055 (+)	399	WP_003134024.1	transcriptional regulator Spx	-
QUD44_RS01945 (LFMS200408A_03770)	-	385191..385964 (+)	774	WP_096368651.1	TatD family hydrolase	-
QUD44_RS01950 (LFMS200408A_03780)	rnmV	385961..386506 (+)	546	WP_096368650.1	ribonuclease M5	-
QUD44_RS01955 (LFMS200408A_03790)	-	386503..387426 (+)	924	WP_096368649.1	ABC transporter ATP-binding protein	-
QUD44_RS01960 (LFMS200408A_03800)	-	387419..388189 (+)	771	WP_096368648.1	ABC transporter permease	-

Sequence

Protein

• Length: 199 a.a.
• Molecular weight: 21787.90 Da
• Isoelectric Point: 4.7242

>NTDB_id=100573 QUD44_RS01925 WP_003134020.1 382751..383350(-) (clpP) [Lactococcus formosensis strain MS200408A]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN
SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide

• Length: 600 bp

>NTDB_id=100573 QUD44_RS01925 WP_003134020.1 382751..383350(-) (clpP) [Lactococcus formosensis strain MS200408A]
ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGCGCATATGACATTTACAGCCGTCTACTGAA
GGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG
CCCAAGACAGCACAAAGGACATTTACCTCTATATTAATACACCTGGTGGTTCTGTGTCTGCTGGACTTGCGATTGTAGAT
ACCATGAACTTCATCAAGTCTGATGTTCAAACAATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG
TGGTACAAAAGGTAAACGTTTCATGTTGCCACATGCAGAATACATGATTCACCAACCTATGGGAGGTACTGGTGGCGGCA
CACAACAAACAGATATGGCTATTGCTGCGGAACATTTGCTTAAAACACGTCGTACTTTAGAAAAGATTTTGGCAGAAAAC
TCTGGTCAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGATAACTGGATGACTGCACAAGAAACATTAGACTATGG
TTTCATTGATGAAATCATGGAAGCCAACAGCTTGAAATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (14-195)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus pneumoniae Rx1	89.796	98.492	0.884
clpP	Streptococcus pneumoniae D39	89.796	98.492	0.884
clpP	Streptococcus pneumoniae R6	89.796	98.492	0.884
clpP	Streptococcus pneumoniae TIGR4	89.796	98.492	0.884
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.94	100	0.879
clpP	Lactococcus lactis subsp. cremoris KW2	87.437	100	0.874
clpP	Streptococcus thermophilus LMG 18311	87.755	98.492	0.864
clpP	Streptococcus thermophilus LMD-9	87.755	98.492	0.864
clpP	Streptococcus pyogenes JRS4	84.184	98.492	0.829
clpP	Streptococcus pyogenes MGAS315	84.184	98.492	0.829
clpP	Streptococcus mutans UA159	84.184	98.492	0.829
clpP	Bacillus subtilis subsp. subtilis str. 168	58.421	95.477	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	96.985	0.553