Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABKA22_RS05540 Genome accession   NZ_CP157287
Coordinates   1088484..1088888 (-) Length   134 a.a.
NCBI ID   WP_003130657.1    Uniprot ID   -
Organism   Lactococcus lactis strain BIM B-1834     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1083484..1093888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA22_RS05510 (ABKA22_05510) - 1083640..1085172 (+) 1533 WP_003130647.1 Nramp family divalent metal transporter -
  ABKA22_RS05515 (ABKA22_05515) - 1085289..1086242 (+) 954 WP_023189344.1 PhoH family protein -
  ABKA22_RS05520 (ABKA22_05520) - 1086300..1086779 (+) 480 WP_003130650.1 NUDIX hydrolase -
  ABKA22_RS05525 (ABKA22_05525) ybeY 1086931..1087419 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  ABKA22_RS05530 (ABKA22_05530) - 1087403..1087858 (+) 456 WP_003130653.1 diacylglycerol kinase -
  ABKA22_RS05535 (ABKA22_05535) - 1087872..1088450 (+) 579 WP_003130655.1 nucleotidyltransferase family protein -
  ABKA22_RS05540 (ABKA22_05540) comFC 1088484..1088888 (-) 405 WP_003130657.1 ComF family protein Machinery gene
  ABKA22_RS05545 (ABKA22_05545) comFA 1089131..1090453 (-) 1323 WP_348619229.1 DEAD/DEAH box helicase Machinery gene
  ABKA22_RS05550 (ABKA22_05550) - 1090510..1091139 (+) 630 WP_003130660.1 YigZ family protein -
  ABKA22_RS05555 (ABKA22_05555) - 1091273..1091770 (+) 498 WP_003130662.1 VanZ family protein -
  ABKA22_RS05560 (ABKA22_05560) - 1091818..1092837 (+) 1020 WP_003130663.1 DUF475 domain-containing protein -
  ABKA22_RS05565 (ABKA22_05565) - 1092952..1093698 (+) 747 WP_348619230.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15735.15 Da        Isoelectric Point: 9.8798

>NTDB_id=1005432 ABKA22_RS05540 WP_003130657.1 1088484..1088888(-) (comFC) [Lactococcus lactis strain BIM B-1834]
MKDYFSQYKFVGDYRLYQIFEPYFKNISQKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1005432 ABKA22_RS05540 WP_003130657.1 1088484..1088888(-) (comFC) [Lactococcus lactis strain BIM B-1834]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAATAT
TTCCCAAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.91

100

0.679
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.194

100

0.41
  comFC Latilactobacillus sakei subsp. sakei 23K

39.231

97.015

0.381

Multiple sequence alignment