Detailed information
Bioinformatically predicted
Overview
| Name | comFC/cflB | Type | Machinery gene |
| Locus tag | FGL04_RS10895 | Genome accession | NZ_LR594035 |
| Coordinates | 510907..511047 (+) | Length | 46 a.a. |
| NCBI ID | WP_225247843.1 | Uniprot ID | - |
| Organism | Streptococcus pseudoporcinus strain NCTC5385 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 505907..516047
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL04_RS02785 (NCTC5385_00585) | cysK | 506131..507057 (-) | 927 | WP_138068164.1 | cysteine synthase A | - |
| FGL04_RS02790 (NCTC5385_00586) | - | 507170..507799 (-) | 630 | WP_077323440.1 | YigZ family protein | - |
| FGL04_RS02795 (NCTC5385_00588) | - | 508007..509112 (+) | 1106 | WP_138068165.1 | IS3 family transposase | - |
| FGL04_RS02800 (NCTC5385_00589) | comFA/cflA | 509127..510377 (+) | 1251 | WP_225247757.1 | DEAD/DEAH box helicase | Machinery gene |
| FGL04_RS02805 (NCTC5385_00590) | comFC/cflB | 510367..510870 (+) | 504 | WP_225247758.1 | ComF family protein | Machinery gene |
| FGL04_RS10895 | comFC/cflB | 510907..511047 (+) | 141 | WP_225247843.1 | phosphoribosyltransferase family protein | Machinery gene |
| FGL04_RS02810 (NCTC5385_00591) | - | 511086..512219 (-) | 1134 | Protein_532 | IS3 family transposase | - |
| FGL04_RS02815 (NCTC5385_00593) | - | 512299..512472 (+) | 174 | Protein_533 | ParA family protein | - |
| FGL04_RS02820 (NCTC5385_00594) | - | 512472..512717 (+) | 246 | WP_138068167.1 | hypothetical protein | - |
| FGL04_RS02825 | - | 512761..513144 (+) | 384 | Protein_535 | replication initiator protein A | - |
| FGL04_RS02830 (NCTC5385_00596) | - | 513148..513507 (+) | 360 | WP_138068168.1 | hypothetical protein | - |
| FGL04_RS02835 (NCTC5385_00597) | - | 513491..513760 (+) | 270 | WP_138068169.1 | hypothetical protein | - |
| FGL04_RS02840 (NCTC5385_00598) | - | 513924..515219 (+) | 1296 | WP_225247844.1 | ISLre2 family transposase | - |
Sequence
Protein
Download Length: 46 a.a. Molecular weight: 5250.19 Da Isoelectric Point: 10.5719
>NTDB_id=1005089 FGL04_RS10895 WP_225247843.1 510907..511047(+) (comFC/cflB) [Streptococcus pseudoporcinus strain NCTC5385]
MTKKVQKNQKLLIIDDIYTTGTTIKHVRDVLIAEGFTNIKSFSIAR
MTKKVQKNQKLLIIDDIYTTGTTIKHVRDVLIAEGFTNIKSFSIAR
Nucleotide
Download Length: 141 bp
>NTDB_id=1005089 FGL04_RS10895 WP_225247843.1 510907..511047(+) (comFC/cflB) [Streptococcus pseudoporcinus strain NCTC5385]
CTGACTAAAAAAGTTCAAAAAAATCAAAAATTATTAATTATTGATGATATTTATACTACTGGTACGACGATAAAACATGT
TAGAGACGTGCTTATTGCAGAAGGCTTTACGAATATAAAAAGTTTCAGTATTGCACGCTAA
CTGACTAAAAAAGTTCAAAAAAATCAAAAATTATTAATTATTGATGATATTTATACTACTGGTACGACGATAAAACATGT
TAGAGACGTGCTTATTGCAGAAGGCTTTACGAATATAAAAAGTTTCAGTATTGCACGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC/cflB | Streptococcus mitis NCTC 12261 |
52.632 |
82.609 |
0.435 |
| comFC/cflB | Streptococcus mitis SK321 |
50 |
82.609 |
0.413 |
| comFC/cflB | Streptococcus pneumoniae Rx1 |
50 |
82.609 |
0.413 |
| comFC/cflB | Streptococcus pneumoniae D39 |
50 |
82.609 |
0.413 |
| comFC/cflB | Streptococcus pneumoniae R6 |
50 |
82.609 |
0.413 |
| comFC/cflB | Streptococcus pneumoniae TIGR4 |
50 |
82.609 |
0.413 |
| comF | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50 |
78.261 |
0.391 |
| comFC | Lactococcus lactis subsp. cremoris KW2 |
47.368 |
82.609 |
0.391 |
| comFC | Latilactobacillus sakei subsp. sakei 23K |
41.463 |
89.13 |
0.37 |