Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   FGL04_RS02800 Genome accession   NZ_LR594035
Coordinates   509127..510377 (+) Length   416 a.a.
NCBI ID   WP_225247757.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 504127..515377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS02775 (NCTC5385_00583) - 504346..505746 (+) 1401 WP_138068163.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FGL04_RS02780 (NCTC5385_00584) - 505746..506099 (+) 354 WP_007892969.1 S1 RNA-binding domain-containing protein -
  FGL04_RS02785 (NCTC5385_00585) cysK 506131..507057 (-) 927 WP_138068164.1 cysteine synthase A -
  FGL04_RS02790 (NCTC5385_00586) - 507170..507799 (-) 630 WP_077323440.1 YigZ family protein -
  FGL04_RS02795 (NCTC5385_00588) - 508007..509112 (+) 1106 WP_138068165.1 IS3 family transposase -
  FGL04_RS02800 (NCTC5385_00589) comFA/cflA 509127..510377 (+) 1251 WP_225247757.1 DEAD/DEAH box helicase Machinery gene
  FGL04_RS02805 (NCTC5385_00590) comFC/cflB 510367..510870 (+) 504 WP_225247758.1 ComF family protein Machinery gene
  FGL04_RS10895 comFC/cflB 510907..511047 (+) 141 WP_225247843.1 phosphoribosyltransferase family protein Machinery gene
  FGL04_RS02810 (NCTC5385_00591) - 511086..512219 (-) 1134 Protein_532 IS3 family transposase -
  FGL04_RS02815 (NCTC5385_00593) - 512299..512472 (+) 174 Protein_533 ParA family protein -
  FGL04_RS02820 (NCTC5385_00594) - 512472..512717 (+) 246 WP_138068167.1 hypothetical protein -
  FGL04_RS02825 - 512761..513144 (+) 384 Protein_535 replication initiator protein A -
  FGL04_RS02830 (NCTC5385_00596) - 513148..513507 (+) 360 WP_138068168.1 hypothetical protein -
  FGL04_RS02835 (NCTC5385_00597) - 513491..513760 (+) 270 WP_138068169.1 hypothetical protein -
  FGL04_RS02840 (NCTC5385_00598) - 513924..515219 (+) 1296 WP_225247844.1 ISLre2 family transposase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 47360.08 Da        Isoelectric Point: 9.7867

>NTDB_id=1005022 FGL04_RS02800 WP_225247757.1 509127..510377(+) (comFA/cflA) [Streptococcus pseudoporcinus strain NCTC5385]
MLYRKVLPFQKDSFEGDGKAYYCGRCLSKAGKDHLLPNEHYYCRQCLVFGRVQSHDKLYYFPAPPFLKGNYLKWKGSLTP
YQESISKQLVENYYLGKWSLVYAVTGAGKTEMIYSVIKEVVNSGKWVALVSPRVDVCIEVYKRLSRDFSCQTILMHAGSE
SYHRAPLVIATTHQLLKFYKAFHLIIIDEVDSFPFVDNPLLNRAVMSALKEEGQLIYLTATSTKFLESEVTKGKLIKLTL
PRRFHNNPLIVPKFQLILNFQNYLDKGKLPTKLYSAIQKQTSLPYPLLIFYPVIEKGQMFYDSLVKSFPNHQIGYVSSQT
AKRKELIEDFRQGSLSILVTTTILERGVTFPGADVFVVLAHHHLFTSSSLIQIAGSVGRSVDRPNGKVIFFHEGVSSAMY
KARKEIIALNKEAYGS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1005022 FGL04_RS02800 WP_225247757.1 509127..510377(+) (comFA/cflA) [Streptococcus pseudoporcinus strain NCTC5385]
ATGTTGTACAGAAAAGTGTTGCCTTTTCAGAAAGATAGTTTTGAGGGTGATGGTAAGGCTTATTATTGCGGACGTTGTCT
CAGTAAAGCTGGTAAAGATCACTTACTTCCTAATGAGCATTATTATTGTAGACAATGTTTAGTTTTTGGACGAGTGCAAA
GTCATGATAAACTCTATTATTTTCCTGCTCCGCCATTTTTAAAAGGAAATTATCTCAAGTGGAAAGGAAGCTTAACTCCT
TATCAAGAGAGTATTTCTAAACAATTAGTTGAAAATTATTATTTAGGAAAATGGAGTCTGGTTTATGCTGTTACAGGGGC
AGGTAAAACGGAGATGATTTATAGCGTTATCAAAGAAGTAGTCAATAGTGGGAAATGGGTTGCTTTAGTCAGTCCGAGAG
TTGATGTCTGTATTGAAGTCTATAAACGCTTAAGCCGTGATTTCTCATGTCAGACTATTTTGATGCATGCGGGGTCAGAA
AGTTATCATAGAGCTCCGCTTGTTATTGCCACAACCCACCAGTTATTGAAGTTTTATAAGGCATTTCATTTGATTATTAT
TGATGAGGTTGATTCTTTTCCCTTTGTTGATAATCCCCTCCTAAATCGTGCTGTTATGTCAGCATTGAAAGAGGAAGGTC
AGTTAATCTATTTGACAGCCACATCCACGAAGTTTTTAGAAAGTGAGGTGACCAAAGGGAAACTGATCAAATTAACACTT
CCAAGACGATTTCATAATAATCCATTAATAGTGCCTAAATTTCAATTGATTTTAAACTTTCAAAACTATTTAGATAAAGG
TAAACTCCCTACCAAACTATACTCTGCCATCCAAAAGCAGACTTCTTTGCCATATCCTCTTTTGATTTTTTATCCTGTCA
TAGAGAAAGGTCAAATGTTCTATGATAGTTTAGTAAAATCATTTCCTAATCACCAAATAGGCTATGTAAGTAGTCAAACG
GCTAAACGTAAAGAATTGATTGAGGACTTTCGTCAAGGGAGTCTGTCGATTCTTGTTACGACTACTATACTAGAAAGAGG
TGTTACTTTTCCTGGGGCAGATGTCTTTGTTGTATTAGCGCATCATCACCTTTTTACGTCTTCAAGTCTCATTCAAATAG
CAGGGAGTGTTGGGAGATCCGTTGATAGACCAAATGGTAAGGTAATATTTTTCCATGAGGGAGTGAGCTCTGCTATGTAT
AAAGCTAGAAAAGAAATAATAGCTTTAAATAAGGAAGCTTATGGATCATAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(84-224)

Helicase conserved C-terminal domain (Helicase_C)

(273-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae D39

56.122

94.231

0.529
  comFA/cflA Streptococcus pneumoniae R6

56.122

94.231

0.529
  comFA/cflA Streptococcus pneumoniae TIGR4

56.122

94.231

0.529
  comFA/cflA Streptococcus pneumoniae Rx1

56.122

94.231

0.529
  comFA/cflA Streptococcus mitis SK321

54.847

94.231

0.517
  comFA/cflA Streptococcus mitis NCTC 12261

54.592

94.231

0.514
  comFA Lactococcus lactis subsp. cremoris KW2

46.667

93.75

0.438
  comFA Latilactobacillus sakei subsp. sakei 23K

38.325

94.712

0.363