Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FGL04_RS02805 Genome accession   NZ_LR594035
Coordinates   510367..510870 (+) Length   167 a.a.
NCBI ID   WP_225247758.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505367..515870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS02780 (NCTC5385_00584) - 505746..506099 (+) 354 WP_007892969.1 S1 RNA-binding domain-containing protein -
  FGL04_RS02785 (NCTC5385_00585) cysK 506131..507057 (-) 927 WP_138068164.1 cysteine synthase A -
  FGL04_RS02790 (NCTC5385_00586) - 507170..507799 (-) 630 WP_077323440.1 YigZ family protein -
  FGL04_RS02795 (NCTC5385_00588) - 508007..509112 (+) 1106 WP_138068165.1 IS3 family transposase -
  FGL04_RS02800 (NCTC5385_00589) comFA/cflA 509127..510377 (+) 1251 WP_225247757.1 DEAD/DEAH box helicase Machinery gene
  FGL04_RS02805 (NCTC5385_00590) comFC/cflB 510367..510870 (+) 504 WP_225247758.1 ComF family protein Machinery gene
  FGL04_RS10895 comFC/cflB 510907..511047 (+) 141 WP_225247843.1 phosphoribosyltransferase family protein Machinery gene
  FGL04_RS02810 (NCTC5385_00591) - 511086..512219 (-) 1134 Protein_532 IS3 family transposase -
  FGL04_RS02815 (NCTC5385_00593) - 512299..512472 (+) 174 Protein_533 ParA family protein -
  FGL04_RS02820 (NCTC5385_00594) - 512472..512717 (+) 246 WP_138068167.1 hypothetical protein -
  FGL04_RS02825 - 512761..513144 (+) 384 Protein_535 replication initiator protein A -
  FGL04_RS02830 (NCTC5385_00596) - 513148..513507 (+) 360 WP_138068168.1 hypothetical protein -
  FGL04_RS02835 (NCTC5385_00597) - 513491..513760 (+) 270 WP_138068169.1 hypothetical protein -
  FGL04_RS02840 (NCTC5385_00598) - 513924..515219 (+) 1296 WP_225247844.1 ISLre2 family transposase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 19535.93 Da        Isoelectric Point: 8.7750

>NTDB_id=1005023 FGL04_RS02805 WP_225247758.1 510367..510870(+) (comFC/cflB) [Streptococcus pseudoporcinus strain NCTC5385]
MDHNCLLCGNRIEDSYSLLEIIFLMKEELIICQPCQKKFKRVDQKHCPACFKSGSAKLCHDCIEWNKKGYEVKHSAMFKY
NDYMKAYFSTYKFQGDYLLRKVFAKPLLKAVRKDYKECVLVPIPVSPERTEIRGFNQVTAILEVAGCQFLPMISKVENEH
QSHRNKV

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1005023 FGL04_RS02805 WP_225247758.1 510367..510870(+) (comFC/cflB) [Streptococcus pseudoporcinus strain NCTC5385]
ATGGATCATAATTGCCTTTTATGTGGAAATCGTATTGAAGACAGTTATTCTCTTTTAGAAATTATTTTTTTAATGAAAGA
GGAACTGATAATATGTCAACCTTGTCAAAAGAAGTTTAAACGAGTGGATCAGAAACATTGTCCAGCTTGTTTCAAATCTG
GGTCAGCTAAACTATGTCATGATTGTATTGAGTGGAACAAAAAAGGATATGAGGTTAAACATTCTGCTATGTTCAAATAT
AACGATTATATGAAAGCGTATTTTTCAACTTACAAATTTCAAGGGGACTATTTACTTAGAAAAGTTTTTGCAAAACCATT
ACTAAAAGCAGTAAGAAAAGATTATAAGGAATGTGTGCTAGTACCGATCCCTGTCAGTCCAGAAAGGACAGAAATAAGAG
GATTTAATCAAGTAACAGCAATCCTGGAAGTGGCAGGCTGTCAATTTTTACCAATGATTAGTAAAGTGGAAAACGAGCAT
CAATCACACAGGAATAAGGTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

42.593

97.006

0.413
  comFC/cflB Streptococcus pneumoniae TIGR4

41.975

97.006

0.407
  comFC/cflB Streptococcus mitis NCTC 12261

41.975

97.006

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

41.358

97.006

0.401
  comFC/cflB Streptococcus pneumoniae D39

41.358

97.006

0.401
  comFC/cflB Streptococcus pneumoniae R6

41.358

97.006

0.401

Multiple sequence alignment