Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABI122_RS09875 Genome accession   NZ_CP157205
Coordinates   1906483..1906770 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain 9.1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901483..1911770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI122_RS09855 (ABI122_09855) - 1902657..1902854 (+) 198 WP_017673210.1 DUF4083 domain-containing protein -
  ABI122_RS09860 (ABI122_09860) - 1902886..1903347 (+) 462 WP_000024999.1 NUDIX hydrolase -
  ABI122_RS09865 (ABI122_09865) nadE 1903397..1904215 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  ABI122_RS09870 (ABI122_09870) - 1904486..1906366 (+) 1881 WP_001025988.1 ABC transporter permease -
  ABI122_RS09875 (ABI122_09875) abrB 1906483..1906770 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ABI122_RS09880 (ABI122_09880) - 1907046..1907993 (+) 948 WP_000099760.1 serine protease -
  ABI122_RS09885 (ABI122_09885) - 1908035..1908343 (-) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  ABI122_RS09890 (ABI122_09890) - 1908450..1909385 (+) 936 WP_000877965.1 aldo/keto reductase -
  ABI122_RS09895 (ABI122_09895) - 1909433..1910608 (+) 1176 WP_048655667.1 MFS transporter -
  ABI122_RS09900 (ABI122_09900) - 1910657..1910863 (+) 207 WP_001101741.1 hypothetical protein -
  ABI122_RS09905 (ABI122_09905) - 1911007..1911369 (+) 363 WP_001198796.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=1004636 ABI122_RS09875 WP_000648324.1 1906483..1906770(+) (abrB) [Bacillus thuringiensis strain 9.1]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1004636 ABI122_RS09875 WP_000648324.1 1906483..1906770(+) (abrB) [Bacillus thuringiensis strain 9.1]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment