Detailed information NTG1003192

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: ABHI23_RS16345
• Genome accession: NZ_CP156913
• Coordinates: 3839118..3840854 (-)
• Length: 578 a.a.
• NCBI ID: WP_033482835.1
• Uniprot ID: -
• Organism: Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3841149..3854326	3839118..3840854	flank	295

Gene organization within MGE regions

Location: 3839118..3854326

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHI23_RS16345 (ABHI23_16350)	pilB	3839118..3840854 (-)	1737	WP_033482835.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABHI23_RS16350	-	3840896..3841099 (-)	204	WP_386266589.1	hypothetical protein	-
ABHI23_RS16355 (ABHI23_16355)	-	3841149..3842111 (-)	963	WP_103791079.1	IS1595-like element IS1595 family transposase	-
ABHI23_RS16360 (ABHI23_16360)	pilA2	3842199..3842390 (-)	192	WP_157380112.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
ABHI23_RS16365 (ABHI23_16365)	comP	3842487..3842915 (-)	429	WP_005921364.1	pilin	Machinery gene
ABHI23_RS16370 (ABHI23_16370)	pilC	3843260..3844519 (+)	1260	WP_033483308.1	type II secretion system F family protein	Machinery gene
ABHI23_RS16375 (ABHI23_16375)	-	3844526..3845389 (+)	864	WP_003491180.1	A24 family peptidase	-
ABHI23_RS16380 (ABHI23_16380)	coaE	3845403..3846011 (+)	609	WP_003491178.1	dephospho-CoA kinase	-
ABHI23_RS16385 (ABHI23_16385)	-	3846109..3847071 (+)	963	WP_103791079.1	IS1595-like element IS1595 family transposase	-
ABHI23_RS16390 (ABHI23_16390)	-	3847888..3849044 (+)	1157	WP_087942126.1	IS3-like element ISXc8 family transposase	-
ABHI23_RS16395 (ABHI23_16395)	-	3849049..3853119 (-)	4071	Protein_3214	RHS repeat-associated core domain-containing protein	-
ABHI23_RS16400 (ABHI23_16400)	-	3853364..3854326 (-)	963	WP_103791079.1	IS1595-like element IS1595 family transposase	-

Sequence

Protein

• Length: 578 a.a.
• Molecular weight: 62654.75 Da
• Isoelectric Point: 5.7586

>NTDB_id=1003192 ABHI23_RS16345 WP_033482835.1 3839118..3840854(-) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716]
MNVAIGSNLVGITGIARRLVQDGALDEASARAAMDHATQAKVPLPQWFAEKKLVTAAQLAAANAVEFGMPLMDVSAFDAN
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEAILVDEDQIRRTLEQWQASNASLGSSLG
NDDEEMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
DNALLAEGFTPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALM
KAAHGVTSLAEINRVTKD

Nucleotide

• Length: 1737 bp

>NTDB_id=1003192 ABHI23_RS16345 WP_033482835.1 3839118..3840854(-) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716]
ATGAACGTTGCAATCGGCTCAAATCTAGTTGGAATTACTGGTATTGCGCGGCGCCTTGTTCAGGATGGTGCGCTTGATGA
GGCGAGCGCGCGTGCGGCAATGGATCACGCAACCCAGGCCAAAGTTCCTTTACCGCAATGGTTCGCCGAAAAGAAGCTTG
TAACAGCCGCACAACTCGCGGCCGCCAACGCAGTCGAGTTTGGCATGCCTTTGATGGATGTATCGGCGTTCGATGCCAAC
CAGAACGCGGTCAAGCTGGTCAGTGAAGAGTTGCTCCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTT
GTTCGTGGGGGTGAGCAATCCGACCCAGACCCGGGCGCTGGACGACATCAAGTTCCATACGAACTTGGTGGTCGAGGCCA
TTCTTGTCGACGAGGATCAGATCCGCCGGACGCTCGAACAGTGGCAGGCCAGCAACGCGTCGTTGGGTTCGTCGCTTGGC
AACGACGACGAGGAAATGGGGGATCTGGACGTCTCGGCCGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCCTCGGACA
TCCATTTCGAGCCGTATGAAGACGACTACCGGGTGCGCTTGCGCATCGATGGCCTGTTGAAGAACGTGGCCAAGGCGCCG
GTGAAGCTGAACCAGCGCATCGCAGCGCGGTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTCAGCACCTTGCCGACCCTGTTCGGAGAGA
AGGTGGTGCTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGCTACGAGCCGGACCAGCAGAAG
CTGTTCCTGGAAGCGATCCACAAGCCCTATGGCATGGTGCTGGTGACCGGGCCGACCGGCTCGGGCAAGACGGTGTCGTT
GTACACCGCGCTGGGAATTCTCAACGACGAGACGCGCAATATCTCCACCGCGGAGGATCCGGTCGAAATCCGCTTGCCTG
GCGTCAATCAGGTGCAGCAGAACAACAAGCGTGGCATGACCTTCGCCGCGGCTTTGCGCTCGTTCCTGCGCCAGGACCCG
GACATCATCATGGTCGGCGAAATCCGTGACCTGGAGACTGCCGAGATTGCGATCAAGGCGGCGCAGACGGGTCACATGGT
GCTGTCGACGTTGCACACCAACGATGCGCCGCAGACCATCGCGCGTCTGATGAACATGGGCATCGCGCCCTACAACATCA
CCTCGTCGGTGACGCTGGTGATCGCGCAGCGTCTGGCGCGGCGCTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCT
GACAACGCATTGCTGGCCGAAGGGTTCACGCCTGCACAGCTTGCCGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGA
TGAGTGCACCGAAGGTTACAAGGGGCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGGCGCAATCGTGC
TGGAAGGCGGCAATGCGATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATG
AAGGCTGCGCACGGGGTGACCAGCCTGGCCGAGATCAATCGTGTGACGAAGGACTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (49-153)

• Type II/IV secretion system protein (T2SSE) (201-468)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baumannii D1279779	56.162	98.27	0.552
pilB	Acinetobacter baylyi ADP1	55.282	98.27	0.543
pilB	Legionella pneumophila strain ERS1305867	51.73	100	0.517
pilB	Vibrio cholerae strain A1552	48.962	100	0.49
pilF	Neisseria gonorrhoeae MS11	49.296	98.27	0.484
pilB	Vibrio parahaemolyticus RIMD 2210633	46.429	96.886	0.45
pilB	Vibrio campbellii strain DS40M4	45.167	98.443	0.445