Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ABHI23_RS16340 Genome accession   NZ_CP156913
Coordinates   3838902..3839021 (-) Length   39 a.a.
NCBI ID   WP_033482837.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3833902..3844021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHI23_RS16325 (ABHI23_16330) - 3835081..3836694 (+) 1614 WP_003488599.1 PAS domain-containing sensor histidine kinase -
  ABHI23_RS16330 (ABHI23_16335) pilR 3837023..3838417 (+) 1395 WP_003488597.1 sigma-54 dependent transcriptional regulator Regulator
  ABHI23_RS16335 (ABHI23_16340) - 3838615..3838770 (-) 156 WP_003488595.1 hypothetical protein -
  ABHI23_RS16340 (ABHI23_16345) pilB 3838902..3839021 (-) 120 WP_033482837.1 hypothetical protein Machinery gene
  ABHI23_RS16345 (ABHI23_16350) pilB 3839118..3840854 (-) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABHI23_RS16350 - 3840896..3841099 (-) 204 WP_386266589.1 hypothetical protein -
  ABHI23_RS16355 (ABHI23_16355) - 3841149..3842111 (-) 963 WP_103791079.1 IS1595-like element IS1595 family transposase -
  ABHI23_RS16360 (ABHI23_16360) pilA2 3842199..3842390 (-) 192 WP_157380112.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABHI23_RS16365 (ABHI23_16365) comP 3842487..3842915 (-) 429 WP_005921364.1 pilin Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4205.86 Da        Isoelectric Point: 9.0113

>NTDB_id=1003191 ABHI23_RS16340 WP_033482837.1 3838902..3839021(-) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716]
MQIAEAAQAIGIRDLRQSALMKAAHGVTNLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1003191 ABHI23_RS16340 WP_033482837.1 3838902..3839021(-) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAACCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

48.718

100

0.487
  pilB Acinetobacter baumannii D1279779

46.154

100

0.462
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385
  pilB Vibrio cholerae strain A1552

42.857

89.744

0.385

Multiple sequence alignment