Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABHI23_RS16330 Genome accession   NZ_CP156913
Coordinates   3837023..3838417 (+) Length   464 a.a.
NCBI ID   WP_003488597.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3832023..3843417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHI23_RS16315 (ABHI23_16320) sucD 3832780..3833655 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  ABHI23_RS16320 (ABHI23_16325) sucC 3833680..3834849 (-) 1170 WP_003488601.1 ADP-forming succinate--CoA ligase subunit beta -
  ABHI23_RS16325 (ABHI23_16330) - 3835081..3836694 (+) 1614 WP_003488599.1 PAS domain-containing sensor histidine kinase -
  ABHI23_RS16330 (ABHI23_16335) pilR 3837023..3838417 (+) 1395 WP_003488597.1 sigma-54 dependent transcriptional regulator Regulator
  ABHI23_RS16335 (ABHI23_16340) - 3838615..3838770 (-) 156 WP_003488595.1 hypothetical protein -
  ABHI23_RS16340 (ABHI23_16345) pilB 3838902..3839021 (-) 120 WP_033482837.1 hypothetical protein Machinery gene
  ABHI23_RS16345 (ABHI23_16350) pilB 3839118..3840854 (-) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABHI23_RS16350 - 3840896..3841099 (-) 204 WP_386266589.1 hypothetical protein -
  ABHI23_RS16355 (ABHI23_16355) - 3841149..3842111 (-) 963 WP_103791079.1 IS1595-like element IS1595 family transposase -
  ABHI23_RS16360 (ABHI23_16360) pilA2 3842199..3842390 (-) 192 WP_157380112.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABHI23_RS16365 (ABHI23_16365) comP 3842487..3842915 (-) 429 WP_005921364.1 pilin Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50147.60 Da        Isoelectric Point: 6.5718

>NTDB_id=1003190 ABHI23_RS16330 WP_003488597.1 3837023..3838417(+) (pilR) [Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1003190 ABHI23_RS16330 WP_003488597.1 3837023..3838417(+) (pilR) [Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCGGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCTTGCCCGCGCACGGCGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAATCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment