Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABEF89_RS01735 Genome accession   NZ_CP156801
Coordinates   364882..367053 (+) Length   723 a.a.
NCBI ID   WP_347456163.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7892     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359882..372053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF89_RS01715 (ABEF89_01715) pilM 361920..362978 (+) 1059 WP_034585542.1 pilus assembly protein PilM Machinery gene
  ABEF89_RS01720 (ABEF89_01720) comN 362978..363622 (+) 645 WP_034585540.1 PilN domain-containing protein Machinery gene
  ABEF89_RS01725 (ABEF89_01725) comO 363619..364338 (+) 720 WP_034585538.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF89_RS01730 (ABEF89_01730) pilP 364338..364865 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF89_RS01735 (ABEF89_01735) pilQ 364882..367053 (+) 2172 WP_347456163.1 type IV pilus secretin PilQ Machinery gene
  ABEF89_RS01740 (ABEF89_01740) aroK 367090..367626 (+) 537 WP_034585528.1 shikimate kinase AroK -
  ABEF89_RS01745 (ABEF89_01745) aroB 367655..368734 (+) 1080 WP_347456164.1 3-dehydroquinate synthase -
  ABEF89_RS01750 (ABEF89_01750) - 368748..369599 (+) 852 WP_347456165.1 hypothetical protein -

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 79148.49 Da        Isoelectric Point: 5.0458

>NTDB_id=1002922 ABEF89_RS01735 WP_347456163.1 364882..367053(+) (pilQ) [Acinetobacter thermotolerans strain ANC 7892]
MNKSFKEFIFGDGNTMNHVFRQFSMGAVAIAVMQVASAQIAITNVVPMQVPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFEQAQQNLKQGNIPVATKEASSVDVSSDAQRARLTVNLADAGAFTTRVEGNSFILKINSNSPVATAQPVVQQATQGIT
NIGFQRGAKGEGQVVIDLASGNTPVDVQQQGTKIVVRALGSKIPVHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQTSD
SYEYMAYQTDNKLTISLKRPEEKNPLRPKAAHHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVTELAKAEEEEAKALAQSAKLAPIQTEYMQLSYAKAADIEKLITQNKSAQNS
TSSSSNTSSNEEKESLLSYRGSVSIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRASTEFTKEIGVKWG
VLSQGITNNNHLLVGGSDTTLWDLREPELDDETGRWKYEIQRPDNLNVDLGVANAAGKIAFGLISLSDFMLDLELSALQA
DGYGEVISTPKVLTADKQKATVESGFEVPYQSTEGSGASATATTEFKDVVLKLDVTPSITPDGKVQMDLDISSDSIAGVT
PMGEYYLNKNRLNTNVLVENGETVVLGGIFEQETLNQQTKVPFLGDIPYLGRLFRKDAKSDNKRELLIFVTPRIVNDSVS
RNH

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=1002922 ABEF89_RS01735 WP_347456163.1 364882..367053(+) (pilQ) [Acinetobacter thermotolerans strain ANC 7892]
ATGAATAAAAGTTTTAAAGAATTTATTTTTGGGGATGGTAATACAATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGC
AGTTGCGATTGCAGTGATGCAGGTGGCAAGTGCACAGATCGCAATCACCAATGTGGTGCCAATGCAGGTTCCTGGGCAAG
GAACCGAAATTCGTGTGATGTTTAATGGTTTGCCGCCTCAGCCACAAGCCTATCAGCTGGAATCGCCATCTCGCCTGATT
CTGGATTTTGAACAGGCACAGCAGAATCTGAAACAAGGTAATATTCCTGTTGCAACAAAAGAAGCAAGTTCTGTTGATGT
ATCCTCAGACGCACAACGTGCACGTTTAACGGTGAATCTGGCGGATGCGGGTGCATTTACCACACGTGTCGAAGGCAACA
GCTTTATTTTAAAGATCAATTCTAATAGCCCAGTGGCTACTGCTCAGCCAGTAGTTCAACAGGCTACTCAAGGGATTACC
AATATTGGCTTCCAGCGGGGTGCTAAAGGTGAAGGACAAGTCGTCATTGATCTGGCGAGTGGAAATACACCAGTTGATGT
ACAGCAACAAGGCACTAAGATTGTGGTTCGAGCTTTGGGGAGCAAGATCCCAGTGCATTTAACCCGTCGTTTGAATGTGA
ATGATTTTGCCACACCGGTTTCTACTGTAGATGCAGTCAACCAAAATGGTTCAGGTGTGATTACCATTCAGACTTCAGAT
AGCTATGAATATATGGCGTATCAAACTGATAACAAGCTAACGATCAGTTTGAAACGTCCAGAAGAGAAAAATCCGCTACG
TCCTAAAGCAGCTCATCATTATACAGGCAAGAAAATTTCTCTAGATTTCCAGGATATTGAAGTTCGCCGAGTATTGCAGT
TGTTAGCGGACTTTACTGATATCAATATGGTGGCAGCGGATAGCGTACAAGGGAATATTACTTTGCGTCTTAAGGAAGTA
CCTTGGGATCAAGCGCTAGATATTGTTTTAAAGACCAAAAATCTGGATAAACGCCGTAATGGGAATGTCATCTGGATTGC
TCCTGTTACAGAACTAGCGAAAGCTGAAGAAGAAGAAGCCAAAGCATTAGCACAAAGTGCTAAACTTGCACCAATTCAAA
CTGAATATATGCAGCTTAGTTATGCTAAGGCAGCGGATATTGAAAAGTTAATTACACAAAATAAATCCGCGCAAAACTCT
ACTAGTTCTTCAAGTAATACCTCATCTAATGAAGAAAAAGAAAGTCTATTAAGTTATCGTGGTTCTGTATCTATAGATGC
TCGTACTAACACTTTAATTGTGAATGATACCCAGCCATTTATCGATAAAATTCGTAATATGGTGGATTTACTAGATGTAC
AGGTGAAGCAGGTTATGGTGGAAGCACGTATTGTCCGTGCATCTACAGAATTTACCAAAGAGATTGGGGTGAAATGGGGA
GTTTTATCTCAGGGTATTACCAATAATAATCACCTTCTGGTAGGTGGAAGTGATACCACACTTTGGGATCTGCGCGAACC
TGAATTGGATGATGAAACAGGTCGCTGGAAATATGAAATTCAACGTCCAGATAACCTTAATGTTGATTTAGGTGTAGCTA
ATGCTGCAGGTAAAATTGCATTTGGTTTGATTAGTCTCTCGGACTTTATGCTTGATCTTGAACTTTCTGCACTACAAGCA
GATGGCTATGGTGAGGTGATTTCTACTCCGAAAGTACTGACTGCAGACAAGCAGAAAGCGACTGTTGAATCAGGTTTTGA
AGTGCCATACCAGTCTACTGAAGGGAGTGGTGCGAGTGCTACAGCTACAACTGAATTTAAGGATGTAGTACTTAAGCTTG
ATGTGACTCCAAGTATTACGCCTGATGGAAAAGTGCAAATGGATCTGGATATTTCGAGTGACAGTATCGCTGGGGTAACA
CCAATGGGTGAATACTATCTCAATAAAAACCGCCTGAACACGAATGTTCTAGTTGAAAATGGCGAAACAGTAGTGCTTGG
TGGTATTTTTGAACAAGAAACTCTGAATCAGCAGACTAAAGTGCCTTTCTTGGGGGACATTCCTTATTTGGGGCGTTTAT
TCCGCAAAGATGCAAAATCGGATAACAAACGTGAGCTGCTGATTTTTGTTACCCCTCGAATTGTTAATGACAGTGTTTCA
AGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(306-348)

Bacterial type II and III secretion system protein (Secretin)

(557-715)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)

AMIN domain (AMIN)

(54-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.648

99.723

0.734
  pilQ Acinetobacter baumannii strain A118

73.509

99.723

0.733
  comQ Acinetobacter baylyi ADP1

70

99.585

0.697
  pilQ Pseudomonas aeruginosa PAK

41.726

97.787

0.408
  pilQ Legionella pneumophila strain Lp02

38.667

93.361

0.361

Multiple sequence alignment